Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8.

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TitleDevelopmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8.
Publication TypeJournal Article
Year of Publication2016
AuthorsSoto, C, Ofek, GA, M Joyce, G, Zhang, B, McKee, K, Longo, NS, Yang, Y, Huang, J, Parks, R, Eudailey, J, Lloyd, KE, S Alam, M, Haynes, BF, Mullikin, JC, Connors, M, Mascola, JR, Shapiro, L, Kwong, PD
Corporate AuthorsNISC Comparative Sequencing Program
JournalPLoS One
Volume11
Issue6
Paginatione0157409
Date Published2016
ISSN1932-6203
Abstract

Antibody 10E8 targets the membrane-proximal external region (MPER) of HIV-1 gp41, neutralizes >97% of HIV-1 isolates, and lacks the auto-reactivity often associated with MPER-directed antibodies. The developmental pathway of 10E8 might therefore serve as a promising template for vaccine design, but samples from time-of-infection-often used to infer the B cell record-are unavailable. In this study, we used crystallography, next-generation sequencing (NGS), and functional assessments to infer the 10E8 developmental pathway from a single time point. Mutational analysis indicated somatic hypermutation of the 2nd-heavy chain-complementarity determining region (CDR H2) to be critical for neutralization, and structures of 10E8 variants with V-gene regions reverted to genomic origin for heavy-and-light chains or heavy chain-only showed structural differences >2 Å relative to mature 10E8 in the CDR H2 and H3. To understand these developmental changes, we used bioinformatic sieving, maximum likelihood, and parsimony analyses of immunoglobulin transcripts to identify 10E8-lineage members, to infer the 10E8-unmutated common ancestor (UCA), and to calculate 10E8-developmental intermediates. We were assisted in this analysis by the preservation of a critical D-gene segment, which was unmutated in most 10E8-lineage sequences. UCA and early intermediates weakly bound a 26-residue-MPER peptide, whereas HIV-1 neutralization and epitope recognition in liposomes were only observed with late intermediates. Antibody 10E8 thus develops from a UCA with weak MPER affinity and substantial differences in CDR H2 and H3 from the mature 10E8; only after extensive somatic hypermutation do 10E8-lineage members gain recognition in the context of membrane and HIV-1 neutralization.

DOI10.1371/journal.pone.0157409
Alternate JournalPLoS ONE
PubMed ID27299673