Publications

Comparative global transcription analysis of sodium hypochlorite, peracetic acid, and hydrogen peroxide on Pseudomonas aeruginosa.
Small DA, Chang W, Toghrol F, Bentley WE. 2007. Comparative global transcription analysis of sodium hypochlorite, peracetic acid, and hydrogen peroxide on Pseudomonas aeruginosa. Applied microbiology and biotechnology 76(5): 1093-105.
The design and characterization of two proteins with 88% sequence identity but different structure and function.
Alexander PA, He Y, Chen Y, Orban J, Bryan PN. 2007. The design and characterization of two proteins with 88% sequence identity but different structure and function. Proceedings of the National Academy of Sciences of the United States of America 104(29): 11963-8.
Limits on variations in protein backbone dynamics from precise measurements of scalar couplings.
Vögeli B, Ying J, Grishaev A, Bax A. 2007. Limits on variations in protein backbone dynamics from precise measurements of scalar couplings. Journal of the American Chemical Society 129(30): 9377-85.
A search for inhibitors of S100B, a member of the S100 family of calcium-binding proteins.
Markowitz J, MacKerell AD, Weber DJ. 2007. A search for inhibitors of S100B, a member of the S100 family of calcium-binding proteins. Mini reviews in medicinal chemistry 7(6): 609-16.
Transglutaminase crosslinked gelatin as a tissue engineering scaffold.
Yung CW, Wu LQ, Tullman JA, Payne GF, Bentley WE, Barbari TA. 2007. Transglutaminase crosslinked gelatin as a tissue engineering scaffold. Journal of biomedical materials research. Part A 83(4): 1039-1046. DOI: 10.1002/jbm.a.31431
Intraspecific genetic variations, fitness cost and benefit of RPW8, a disease resistance locus in Arabidopsis thaliana.
Orgil U, Araki H, Tangchaiburana S, Berkey R, Xiao S. 2007. Intraspecific genetic variations, fitness cost and benefit of RPW8, a disease resistance locus in Arabidopsis thaliana. Genetics 176(4): 2317-33.
Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data.
Hladish T, Gopalan V, Liang C, Qiu W, Yang P, Stoltzfus A. 2007. Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data. BMC bioinformatics 8: 191.
An artificially evolved albumin binding module facilitates chemical shift epitope mapping of GA domain interactions with phylogenetically diverse albumins.
He Y, Chen Y, Rozak DA, Bryan PN, Orban J. 2007. An artificially evolved albumin binding module facilitates chemical shift epitope mapping of GA domain interactions with phylogenetically diverse albumins. Protein science : a publication of the Protein Society 16(7): 1490-4.
Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering.
Comoletti D, Grishaev A, Whitten AE, Tsigelny I, Taylor P, Trewhella J. 2007. Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering. Structure (London, England : 1993) 15(6): 693-705.
A novel loop domain in superantigens extends their T cell receptor recognition site.
Günther S, Varma AK, Moza B, Kasper KJ, Wyatt AW, Zhu P, Rahman AK, Li Y, Mariuzza RA, McCormick JK, et al. 2007. A novel loop domain in superantigens extends their T cell receptor recognition site. Journal of molecular biology 371(1): 210-21.
TCR recognition of peptide/MHC class II complexes and superantigens.
Sundberg EJ, Deng L, Mariuzza RA. 2007. TCR recognition of peptide/MHC class II complexes and superantigens. Seminars in immunology 19(4): 262-71.
Quorum sensing in Escherichia coli is signaled by AI-2/LsrR: effects on small RNA and biofilm architecture.
Li J, Attila C, Wang L, Wood TK, Valdes JJ, Bentley WE. 2007. Quorum sensing in Escherichia coli is signaled by AI-2/LsrR: effects on small RNA and biofilm architecture. Journal of bacteriology 189(16): 6011-20.
Targeting cytochrome P450 enzymes: a new approach in anti-cancer drug development.
Bruno RD, Njar VC. 2007. Targeting cytochrome P450 enzymes: a new approach in anti-cancer drug development. Bioorganic & medicinal chemistry 15(15): 5047-60.
Specific protein domains mediate cooperative assembly of HuR oligomers on AU-rich mRNA-destabilizing sequences.
Fialcowitz-White EJ, Brewer BY, Ballin JD, Willis CD, Toth EA, Wilson GM. 2007. Specific protein domains mediate cooperative assembly of HuR oligomers on AU-rich mRNA-destabilizing sequences. The Journal of biological chemistry 282(29): 20948-59.
Structure of human hyaluronidase-1, a hyaluronan hydrolyzing enzyme involved in tumor growth and angiogenesis.
Chao KL, Muthukumar L, Herzberg O. 2007. Structure of human hyaluronidase-1, a hyaluronan hydrolyzing enzyme involved in tumor growth and angiogenesis. Biochemistry 46(23): 6911-20.