IBBR Publications

Found 243 results
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Das R, Mariano J, Tsai YChe, Kalathur RC, Kostova Z, Li J, Tarasov SG, McFeeters RL, Altieri AS, Ji X, et al. Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78. Mol Cell. 2009 ;34(6):674-85.
Tung M, D Gallagher T. The Biomolecular Crystallization Database Version 4: expanded content and new features. Acta Crystallogr D Biol Crystallogr. 2009 ;65(Pt 1):18-23.
Mast N, Liao W-L, Pikuleva IA, Turko IV. Combined use of mass spectrometry and heterologous expression for identification of membrane-interacting peptides in cytochrome P450 46A1 and NADPH-cytochrome P450 oxidoreductase. Arch Biochem Biophys. 2009 ;483(1):81-9.
Michino M, Abola E, Brooks CL, J Dixon S, Moult J, Stevens RC. Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008. Nat Rev Drug Discov. 2009 ;8(6):455-63.
Guvench O, Mackerell AD. Computational fragment-based binding site identification by ligand competitive saturation. PLoS Comput Biol. 2009 ;5(7):e1000435.
Mackerell AD. Contribution of the intrinsic mechanical energy of the phosphodiester linkage to the relative stability of the A, BI, and BII forms of duplex DNA. J Phys Chem B. 2009 ;113(10):3235-44.
K Clark R, Walsh STR. Crystal structure of a 3B3 variant--a broadly neutralizing HIV-1 scFv antibody. Protein Sci. 2009 ;18(12):2429-41.
D Gallagher T, Smith N, Kim S-K, Robinson H, Reddy PT. Profound asymmetry in the structure of the cAMP-free cAMP Receptor Protein (CRP) from Mycobacterium tuberculosis. J Biol Chem. 2009 ;284(13):8228-32.
Charpentier TH, Wilder PT, Liriano MA, Varney KM, Zhong S, Coop A, Pozharski E, Mackerell AD, Toth EA, Weber DJ. Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography. Biochemistry. 2009 ;48(26):6202-12.
Galkin A, Li Z, Li L, Kulakova L, Pal LR, Dunaway-Mariano D, Herzberg O. Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase. Biochemistry. 2009 ;48(14):3186-96.
Narayanan B, Niu W, Joosten H-J, Li Z, Kuipers RKP, Schaap PJ, Dunaway-Mariano D, Herzberg O. Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member. J Mol Biol. 2009 ;386(2):486-503.
D Gallagher T, Ruan B, London M, Bryan MA, Bryan PN. Structure of a switchable subtilisin complexed with a substrate and with the activator azide. Biochemistry. 2009 ;48(43):10389-94.
Bera AK, Atanasova V, Robinson H, Eisenstein E, Coleman JP, Pesci EC, Parsons JF. Structure of PqsD, a Pseudomonas quinolone signal biosynthetic enzyme, in complex with anthranilate. Biochemistry. 2009 ;48(36):8644-55.
Li Y, Cao C, Jia W, Yu L, Mo M, Wang Q, Huang Y, Lim J-M, Ishihara M, Wells L, et al. Structure of the F-spondin domain of mindin, an integrin ligand and pattern recognition molecule. EMBO J. 2009 ;28(3):286-97.
Baniulis D, Yamashita E, Whitelegge JP, Zatsman AI, Hendrich MP, S Hasan S, Ryan CM, Cramer WA. Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochrome b6f Complex from Nostoc sp. PCC 7120. J Biol Chem. 2009 ;284(15):9861-9.
Sorci L, Pan Y, Eyobo Y, Rodionova I, Huang N, Kurnasov O, Zhong S, Mackerell AD, Zhang H, Osterman AL. Targeting NAD biosynthesis in bacterial pathogens: Structure-based development of inhibitors of nicotinate mononucleotide adenylyltransferase NadD. Chem Biol. 2009 ;16(8):849-61.
Galkin A, Kulakova L, Wu R, Gong M, Dunaway-Mariano D, Herzberg O. X-ray structure and kinetic properties of ornithine transcarbamoylase from the human parasite Giardia lamblia. Proteins. 2009 ;76(4):1049-53.