Publications

Structure and Dynamics of a Site-Specific Labeled Fc Fragment with Altered Effector Functions.
Gallagher DT, McCullough C, Brinson RG, Ahn J, Marino JP, Dimasi N, Gallagher DT, McCullough C, Brinson RG, Ahn J, Marino JP, Dimasi N. 2019. Structure and Dynamics of a Site-Specific Labeled Fc Fragment with Altered Effector Functions. Pharmaceutics 11(10): . DOI: 10.3390/pharmaceutics11100546
The host-defense peptide piscidin P1 reorganizes lipid domains in membranes and decreases activation energies in mechanosensitive ion channels.
Comert F, Greenwood A, Maramba J, Acevedo R, Lucas L, Kulasinghe T, Cairns LS, Wen Y, Fu R, Hammer J, et al. 2019. The host-defense peptide piscidin P1 reorganizes lipid domains in membranes and decreases activation energies in mechanosensitive ion channels. The Journal of biological chemistry 294(49): 18557-18570. DOI: 10.1074/jbc.RA119.010232
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, et al. 2019. Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment. Proteins 87(12): 1200-1221. DOI: 10.1002/prot.25838
Characterization of the internal translation initiation region in monoclonal antibodies expressed in Escherichia coli.
Leith EM, O'Dell WB, Ke N, McClung C, Berkmen M, Bergonzo C, Brinson RG, Kelman Z, Leith EM, O'Dell WB, Ke N, McClung C, Berkmen M, Bergonzo C, Brinson RG, Kelman Z. 2019. Characterization of the internal translation initiation region in monoclonal antibodies expressed in <i>Escherichia coli</i>. The Journal of biological chemistry 294(48): 18046-18056. DOI: 10.1074/jbc.RA119.011008
Critical assessment of methods of protein structure prediction (CASP)-Round XIII.
Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J, Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J. 2019. Critical assessment of methods of protein structure prediction (CASP)-Round XIII. Proteins 87(12): 1011-1020. DOI: 10.1002/prot.25823
Geometrical characterization of T cell receptor binding modes reveals class-specific binding to maximize access to antigen.
Singh NK, Abualrous ET, Ayres CM, Noé F, Gowthaman R, Pierce BG, Baker BM, Singh NK, Abualrous ET, Ayres CM, Noé F, Gowthaman R, Pierce BG, Baker BM. 2020. Geometrical characterization of T cell receptor binding modes reveals class-specific binding to maximize access to antigen. Proteins 88(3): 503-513. DOI: 10.1002/prot.25829
A Quality Improvement Approach to Increase Exercise Assessment in Survivors of Childhood Leukemia.
Coven SL, Bibart M, Frost R, Gallagher T, Guinipero T, Valasek AE, Olshefski R, Coven SL, Bibart M, Frost R, Gallagher T, Guinipero T, Valasek AE, Olshefski R. 2022. A Quality Improvement Approach to Increase Exercise Assessment in Survivors of Childhood Leukemia. Pediatric quality & safety 4(4): e198. DOI: 10.1097/pq9.0000000000000198
Rapid Electroformation of Biopolymer Gels in Prescribed Shapes and Patterns: A Simpler Alternative to 3-D Printing.
Gargava A, Ahn S, Bentley WE, Raghavan SR, Gargava A, Ahn S, Bentley WE, Raghavan SR. 2019. Rapid Electroformation of Biopolymer Gels in Prescribed Shapes and Patterns: A Simpler Alternative to 3-D Printing. ACS applied materials & interfaces 11(40): 37103-37111. DOI: 10.1021/acsami.9b12575
Flow Water Proton NMR: In-Line Process Analytical Technology for Continuous Biomanufacturing.
Taraban MB, Briggs KT, Merkel P, Yu YB, Taraban MB, Briggs KT, Merkel P, Yu YB. 2019. Flow Water Proton NMR: In-Line Process Analytical Technology for Continuous Biomanufacturing. Analytical chemistry 91(21): 13538-13546. DOI: 10.1021/acs.analchem.9b02622
Characterization of LysBC17, a Lytic Endopeptidase from Bacillus cereus.
Swift SM, Etobayeva IV, Reid KP, Waters JJ, Oakley BB, Donovan DM, Nelson DC, Swift SM, Etobayeva IV, Reid KP, Waters JJ, Oakley BB, Donovan DM, Nelson DC. 2019. Characterization of LysBC17, a Lytic Endopeptidase from <i>Bacillus cereus</i>. Antibiotics (Basel, Switzerland) 8(3): . DOI: 10.3390/antibiotics8030155
New Family of Water-Soluble Sulfo-Fluoro Polyphosphazenes and Their Assembly within Hemocompatible Nanocoatings.
Albright V, Marin A, Kaner P, Sukhishvili SA, Andrianov AK, Albright V, Marin A, Kaner P, Sukhishvili SA, Andrianov AK. 2019. New Family of Water-Soluble Sulfo-Fluoro Polyphosphazenes and Their Assembly within Hemocompatible Nanocoatings. ACS applied bio materials 2(9): 3897-3906. DOI: 10.1021/acsabm.9b00485
Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition.
Stephens K, Pozo M, Tsao CY, Hauk P, Bentley WE, Stephens K, Pozo M, Tsao CY, Hauk P, Bentley WE. 2019. Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition. Nature communications 10(1): 4129. DOI: 10.1038/s41467-019-12027-6
2D J-correlated proton NMR experiments for structural fingerprinting of biotherapeutics.
Brinson RG, Marino JP, Brinson RG, Marino JP. 2019. 2D J-correlated proton NMR experiments for structural fingerprinting of biotherapeutics. Journal of magnetic resonance (San Diego, Calif. : 1997) 307: 106581. DOI: 10.1016/j.jmr.2019.106581
Practical Guidelines for 13C-Based NMR Metabolomics.
Edison AS, Le Guennec A, Delaglio F, Kupče Ē, Edison AS, Le Guennec A, Delaglio F, Kupče Ē. 2019. Practical Guidelines for 13C-Based NMR Metabolomics. Methods in molecular biology (Clifton, N.J.) 2037: 69-95. DOI: 10.1007/978-1-4939-9690-2_5
Target highlights in CASP13: Experimental target structures through the eyes of their authors.
Lepore R, Kryshtafovych A, Alahuhta M, Veraszto HA, Bomble YJ, Bufton JC, Bullock AN, Caba C, Cao H, Davies OR, et al. 2019. Target highlights in CASP13: Experimental target structures through the eyes of their authors. Proteins 87(12): 1037-1057. DOI: 10.1002/prot.25805
An asymmetry that leads to activity.
Varney KM, Cook ME, Weber DJ, Varney KM, Cook ME, Weber DJ. 2019. An asymmetry that leads to activity. Proceedings of the National Academy of Sciences of the United States of America 116(36): 17614-17615. DOI: 10.1073/pnas.1912729116
Pro- and Anti-oxidant Properties of Redox-Active Catechol-Chitosan Films.
Kim E, Kang M, Liu H, Cao C, Liu C, Bentley WE, Qu X, Payne GF, Kim E, Kang M, Liu H, Cao C, Liu C, Bentley WE, Qu X, Payne GF. 2019. Pro- and Anti-oxidant Properties of Redox-Active Catechol-Chitosan Films. Frontiers in chemistry 7: 541. DOI: 10.3389/fchem.2019.00541
Validation of oxidative stress assay for schizophrenia.
Kim E, Keskey Z, Kang M, Kitchen C, Bentley WE, Chen S, Kelly DL, Payne GF, Kim E, Keskey Z, Kang M, Kitchen C, Bentley WE, Chen S, Kelly DL, Payne GF. 2019. Validation of oxidative stress assay for schizophrenia. Schizophrenia research 212: 126-133. DOI: 10.1016/j.schres.2019.07.057
Second harmonic generation detection of Ras conformational changes and discovery of a small molecule binder.
Donohue E, Khorsand S, Mercado G, Varney KM, Wilder PT, Yu W, MacKerell AD, Alexander P, Van QN, Moree B, et al. 2019. Second harmonic generation detection of Ras conformational changes and discovery of a small molecule binder. Proceedings of the National Academy of Sciences of the United States of America 116(35): 17290-17297. DOI: 10.1073/pnas.1905516116
Translatome Profiling of Plum Pox Virus-Infected Leaves in European Plum Reveals Temporal and Spatial Coordination of Defense Responses in Phloem Tissues.
Collum TD, Stone AL, Sherman DJ, Rogers EE, Dardick C, Culver JN, Collum TD, Stone AL, Sherman DJ, Rogers EE, Dardick C, Culver JN. 2020. Translatome Profiling of Plum Pox Virus-Infected Leaves in European Plum Reveals Temporal and Spatial Coordination of Defense Responses in Phloem Tissues. Molecular plant-microbe interactions : MPMI 33(1): 66-77. DOI: 10.1094/MPMI-06-19-0152-FI