Publications

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Actin Depolymerization Factor (ADF) Moonlighting: Nuclear Immune Regulation by Interacting with WRKY Transcription Factors and Shaping the Transcriptome.
Li P, Kelley B, Li Z, Proctor B, Corrion A, Xie X, Sheick R, Lu YJ, Nomoto M, Wei CI, et al. 2025. Actin Depolymerization Factor (ADF) Moonlighting: Nuclear Immune Regulation by Interacting with WRKY Transcription Factors and Shaping the Transcriptome. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.04.29.651294
Translon: a single term for translated regions.
Świrski MI, Tierney JAS, Albà MM, Andreev DE, Aspden JL, Atkins JF, Bassani-Sternberg M, Berry MJ, Biffo S, Boris-Lawrie K, et al. 2025. Translon: a single term for translated regions. Nature methods 22(10): 2002-2006. DOI: 10.1038/s41592-025-02810-3
Quantifying Hydrogen Populations in Liquid Mixtures Using 1H NMR Relaxometry.
Biswas PG, Taraban MB, Briggs KT, Yu YB. 2025. Quantifying Hydrogen Populations in Liquid Mixtures Using 1H NMR Relaxometry. Analytical chemistry : . DOI: 10.1021/acs.analchem.5c02606
Electrochemistry as a Tool for Redox-Based Bio-Information Processing.
Kim E, Chen CY, Zakaria FR, Motabar D, Kang M, Kelly DL, Napolitano A, Bentley WE, Payne GF. 2025. Electrochemistry as a Tool for Redox-Based Bio-Information Processing. Advanced science (Weinheim, Baden-Wurttemberg, Germany) : e10184. DOI: 10.1002/advs.202510184
Redefining druggable targets with artificial intelligence.
Akinsanya K, AlQuraishi M, Boija A, Chodera J, Cichońska A, Ghassemi M, Head M, Jin W, Kibbe WA, Krogan N, et al. 2025. Redefining druggable targets with artificial intelligence. Nature biotechnology : . DOI: 10.1038/s41587-025-02770-1
Computational Prioritization of T Cell Epitopes to Overcome HLA Restriction and Antigenic Diversity in Plasmodium falciparum.
Laurenson AJ, Pierce BG, Takala-Harrison S, Laurens MB. 2025. Computational Prioritization of T Cell Epitopes to Overcome HLA Restriction and Antigenic Diversity in <i>Plasmodium falciparum</i>. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.07.14.664425
Chromosome-level reference genome of Vitis piasezkii var. pagnucii provides insights into a new locus of resistance to grapevine powdery mildew.
Zhao L, Hu Y, Ji QY, Gong LX, Lu MJ, Yu XN, Jin ZS, Zhou M, Dai XL, Xiao SY, et al. 2025. Chromosome-level reference genome of <i>Vitis piasezkii</i> var. <i>pagnucii</i> provides insights into a new locus of resistance to grapevine powdery mildew. Horticulture research 12(9): uhaf146. DOI: 10.1093/hr/uhaf146
GaSal-2: A Water-Soluble Antipseudomonal Agent Targeting the Extracellular Hemophore HasAp.
Frank A, Hwang L, Witt WT, Centola G, Johnson K, Ai Y, Sen-Kilic E, Pyles GM, Huckaby AB, Blackwood CB, et al. 2025. GaSal-2: A Water-Soluble Antipseudomonal Agent Targeting the Extracellular Hemophore HasAp. ACS infectious diseases : . DOI: 10.1021/acsinfecdis.5c00296
Genomic insights reveal community structure and phylogenetic associations of endohyphal bacteria and viruses in fungal endophytes.
Escudero-Leyva E, Belle M, DadkhahTehrani A, Culver JN, Araya-Salas M, Kutza JP, Goldson N, Chavarría M, Chaverri P. 2025. Genomic insights reveal community structure and phylogenetic associations of endohyphal bacteria and viruses in fungal endophytes. Environmental microbiome 20(1): 95. DOI: 10.1186/s40793-025-00757-8
Seeing is believing: Genome editing made easy with RUBY for educational purposes.
Sexton WK, Cheng Y, Yang B, Ullah H, Qi Y, Xiao S. 2025. Seeing is believing: Genome editing made easy with RUBY for educational purposes. Plant physiology 198(3): . DOI: 10.1093/plphys/kiaf265
How Electric Field Remodels the Nanofibril Structure of Chitosan Hydrogels: the Role of Dewetting During Electro-Assembly.
Romany A, Payne GF, Shen J. 2025. How Electric Field Remodels the Nanofibril Structure of Chitosan Hydrogels: the Role of Dewetting During Electro-Assembly. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.04.25.650622
Genetically-programmed Hypervesiculation of Lactiplantibacillus plantarum Increases Production of Bacterial Extracellular Vesicles with Therapeutic Efficacy in a Preclinical Inflammatory Bowel Disease Model.
Pirolli NH, Levy D, Schledwitz A, Moura NS, Solomon TJ, Powsner EH, Nowak R, Mamczarz Z, Bridgeman CJ, Khan S, et al. 2025. Genetically-programmed Hypervesiculation of <i>Lactiplantibacillus plantarum</i> Increases Production of Bacterial Extracellular Vesicles with Therapeutic Efficacy in a Preclinical Inflammatory Bowel Disease Model. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.06.20.660770
de novo Fabrication of Dense Collagen Matrices with Patterned Hierarchical Structures for Corneal Stromal Tissue Repair.
Lei M, Hou B, Zhang S, Chang R, Ji Y, Chen K, Sun J, Liu C, Payne GF, Qu X. 2025. de novo Fabrication of Dense Collagen Matrices with Patterned Hierarchical Structures for Corneal Stromal Tissue Repair. Advanced materials (Deerfield Beach, Fla.) : e2502279. DOI: 10.1002/adma.202502279
Top-Down Scoring of Spectral Fitness by Image Analysis for Protein Structure Validation.
Harding BD, DeZonia B, Garg R, Hu Z, Delaglio F, Grant T, Rienstra CM. 2025. Top-Down Scoring of Spectral Fitness by Image Analysis for Protein Structure Validation. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.05.05.652267
Measuring oxidative stress by the iridium reducing capacity assay (Ir-RCA).
Falk LN, Bentley WE, Kelly DL, Payne GF, Kim E. 2025. Measuring oxidative stress by the iridium reducing capacity assay (Ir-RCA). Advances in redox research 15: . DOI: 10.1016/j.arres.2025.100129