IBBR Publications

Josey BP, Heinrich F, Silin VI, Lösche M. Association of Model Neurotransmitters with Lipid Bilayer Membranes. Biophys J. 2020 .

Easterhoff D, Pollara J, Luo K, Janus B, Gohain N, Williams LTD, Tay MZirui, Monroe A, Peachman K, Choe M, et al. HIV vaccine delayed boosting increases Env variable region 2-specific antibody effector functions. JCI Insight. 2020 ;5(2).

Galkin A, Chen Y, Guenaga J, O'Dell S, Acevedo R, Steinhardt JJ, Wang Y, Wilson R, Chiang C-I, Doria-Rose N, et al. HIV-1 gp120-CD4-Induced Antibody Complex Elicits CD4 Binding Site-Specific Antibody Response in Mice. J Immunol. 2020 .

Mackerell AD, Jo S, Lakkaraju SKaushik, Lind C, Yu W. Identification and characterization of fragment binding sites for allosteric ligand design using the site identification by ligand competitive saturation hotspots approach (SILCS-Hotspots). Biochim Biophys Acta Gen Subj. 2020 ;1864(4):129519.

Kognole AA, Mackerell AD. Mg Impacts the Twister Ribozyme through Push-Pull Stabilization of Nonsequential Phosphate Pairs. Biophys J. 2020 .

Turchi M, Kognole AA, Kumar A, Cai Q, Lian G, Mackerell AD. Predicting Partition Coefficients of Neutral and Charged Solutes in the Mixed SLES-Fatty Acids Micellar System. J Phys Chem B. 2020 .

Andrianov AK, Marin A, Deng J, Fuerst TR. Protein-loaded soluble and nanoparticulate formulations of ionic polyphosphazenes and their interactions on molecular and cellular levels. Mater Sci Eng C Mater Biol Appl. 2020 ;106:110179.

Song J, Liu H, Lei M, Tan H, Chen Z, Antoshin A, Payne GF, Qu X, Liu C. Redox-Channeling Polydopamine-Ferrocene (PDA-Fc) Coating To Confer Context-Dependent and Photothermal Antimicrobial Activities. ACS Appl Mater Interfaces. 2020 .

Xu X, Godoy-Ruiz R, Adipietro KA, Peralta C, Ben-Hail D, Varney KM, Cook ME, Roth BM, Wilder PT, Cleveland T, et al. Structure of the cell-binding component of the binary toxin reveals a di-heptamer macromolecular assembly. Proc Natl Acad Sci U S A. 2020 .

Kelman LM, O'Dell WB, Kelman Z. Unwinding twenty years of the archaeal minichromosome maintenance helicase. J Bacteriol. 2020 .

Brinson RG, Marino JP. 2D J-correlated proton NMR experiments for structural fingerprinting of biotherapeutics. J Magn Reson. 2019 ;307:106581.

Urbanowicz RA, Wang R, Schiel JE, Keck Z-Y, Kerzic MC, Lau P, Rangarajan S, Garagusi KJ, Tan L, Guest JD, et al. Antigenicity and Immunogenicity of Differentially Glycosylated HCV E2 Envelope Proteins Expressed in Mammalian and Insect Cells. J Virol. 2019 .

Lei L, Tran K, Wang Y, Steinhardt JJ, Xiao Y, Chiang C-I, Wyatt RT, Li Y. Antigen-Specific Single B Cell Sorting and Monoclonal Antibody Cloning in Guinea Pigs. Front Microbiol. 2019 ;10:672.

Kasak L, Bakolitsa C, Hu Z, Yu C, Rine J, Dimster-Denk DF, Pandey G, De Baets G, Bromberg Y, Cao C, et al. Assessing Computational Predictions of the Phenotypic Effect of Cystathionine-beta-Synthase Variants. Hum Mutat. 2019 .

Nazario-Toole AE, Wu LP. Assessing the Cellular Immune Response of the Fruit Fly, Drosophila melanogaster, Using an In Vivo Phagocytosis Assay. J Vis Exp. 2019 ;(146).

Pejaver V, Babbi G, Casadio R, Folkman L, Katsonis P, Kundu K, Lichtarge O, Martelli PLuigi, Miller M, Moult J, et al. Assessment of methods for predicting the effects of PTEN and TPMT protein variants. Hum Mutat. 2019 .

Carraro M, Monzon AMiguel, Chiricosta L, Reggiani F, Aspromonte MCristina, Bellini M, Pagel K, Jiang Y, Radivojac P, Kundu K, et al. Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge. Hum Mutat. 2019 .

Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, Bromberg Y, Casadio R, Dunbrack R, Folkman L, et al. Assessment of predicted enzymatic activity of alpha-N-acetylglucosaminidase (NAGLU) variants of unknown significance for CAGI 2016. Hum Mutat. 2019 .

Ueda H, Stephens K, Trivisa K, Bentley WE. Bacteria Floc, but Do They Flock? Insights from Population Interaction Models of Quorum Sensing. MBio. 2019 ;10(3).

Stephens K, Pozo M, Tsao C-Y, Hauk P, Bentley WE. Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition. Nat Commun. 2019 ;10(1):4129.

Keck Z-Y, Pierce BG, Lau P, Lu J, Wang Y, Underwood A, Bull RA, Prentoe J, Velázquez-Moctezuma R, Walker MR, et al. Broadly neutralizing antibodies from an individual that naturally cleared multiple hepatitis C virus infections uncover molecular determinants for E2 targeting and vaccine design. PLoS Pathog. 2019 ;15(5):e1007772.

Kasak L, Hunter JM, Udani R, Bakolitsa C, Hu Z, Adhikari AN, Babbi G, Casadio R, Gough J, Guerrero RF, et al. CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases. Hum Mutat. 2019 .

Wu S, Kim E, Li J, Bentley WE, Shi X-W, Payne GF. Catechol-Based Capacitor for Redox-Linked Bioelectronics. ACS Appl Electron Mater. 2019 ;1(8):1337-1347.

Wang Z, Tschirhart T, Schultzhaus Z, Kelly EE, Chen A, Oh E, Nag O, Glaser ER, Kim E, Lloyd PF, et al. Characterization and application of melanin produced by the fast-growing marine bacterium through heterologous biosynthesis. Appl Environ Microbiol. 2019 .

Swift SM, Etobayeva IV, Reid KP, Waters JJ, Oakley BB, Donovan DM, Nelson DC. Characterization of LysBC17, a Lytic Endopeptidase from . Antibiotics (Basel). 2019 ;8(3).