IBBR Publications

Found 2658 results
2019
Lin S, Yang S, He J, Guest JD, Ma Z, Yang L, Pierce BG, Tang Q, Zhang Y-J. Zika virus NS5 protein antagonizes type I interferon production via blocking TBK1 activation. Virology. 2019 ;527:180-187.
2018
King MR, Bentley WE, Eniola-Adefeso L. The 2018 Young Innovators of Cellular and Molecular Bioengineering. Cell Mol Bioeng. 2018 ;11(5):307-308.
Swaroop A, Oyer JA, Will CM, Huang X, Yu W, Troche C, Bulic M, Durham BH, Wen QJeremy, Crispino JD, et al. An activating mutation of the NSD2 histone methyltransferase drives oncogenic reprogramming in acute lymphocytic leukemia. Oncogene. 2018 .
Zhang Q, Berkey R, Blakeslee JJ, Lin J, Ma X, King H, Liddle A, Guo L, Munnik T, Wang X, et al. Arabidopsis phospholipase Dα1 and Dδ oppositely modulate EDS1- and SA-independent basal resistance against adapted powdery mildew. J Exp Bot. 2018 ;69(15):3675-3688.
Zatopek KM, Gardner AF, Kelman Z. Archaeal DNA replication and repair: new genetic, biophysical, and molecular tools for discovering and characterizing enzymes, pathways, and mechanisms. FEMS Microbiol Rev. 2018 .
Anderson KW, Gallagher ES, Hudgens JW. Automated removal of phospholipids from membrane proteins for H/D exchange mass spectrometry workflows. Anal Chem. 2018 .
Selin V, Albright V, Ankner JF, Marin A, Andrianov AK, Sukhishvili SA. Biocompatible Nanocoatings of Fluorinated Polyphosphazenes through Aqueous Assembly. ACS Appl Mater Interfaces. 2018 .
Liu Y, Wu H-C, Bhokisham N, Li J, Hong K-L, Quan DN, Tsao C-Y, Bentley WE, Payne GF. Biofabricating Functional Soft Matter Using Protein Engineering to Enable Enzymatic Assembly. Bioconjug Chem. 2018 .
Liu H, Qu X, Kim E, Lei M, Dai K, Tan X, Xu M, Li J, Liu Y, Shi X, et al. Bio-inspired redox-cycling antimicrobial film for sustained generation of reactive oxygen species. Biomaterials. 2018 ;162:109-122.
Bentley WE, Martin DK, Gotoh T. Biomimetic and Bioinspired Biotechnology. Biotechnol J. 2018 ;13(12):e1800670.
Zhuang X, Yang X, Altieri AS, Nelson DC, Pal U. Borrelia burgdorferi surface-located Lmp1 protein processed into region-specific polypeptides that are critical for microbial persistence. Cell Microbiol. 2018 :e12855.
Yan K, Liu Y, Guan Y, Bhokisham N, Tsao C-Y, Kim E, Shi X-W, Wang Q, Bentley WE, Payne GF. Catechol-chitosan redox capacitor for added amplification in electrochemical immunoanalysis. Colloids Surf B Biointerfaces. 2018 ;169:470-477.
Khan HMuhammad, Mackerell AD, Reuter N. Cation-π interactions between methylated ammonium groups and tryptophan in the CHARMM36 additive force field. J Chem Theory Comput. 2018 .
Castellanos MMonica, Howell SC, D Gallagher T, Curtis JE. Characterization of the NISTmAb Reference Material using small-angle scattering and molecular simulation : Part I: Dilute protein solutions. Anal Bioanal Chem. 2018 ;410(8):2141-2159.
Aytenfisu AH, Yang M, Mackerell AD. CHARMM Drude Polarizable Force Field for Glycosidic Linkages Involving Pyranoses and Furanoses. J Chem Theory Comput. 2018 .
Villa F, Mackerell AD, Roux B, Simonson T. Classical Drude Polarizable Force Field Model for Methyl Phosphate and Its Interactions with Mg. J Phys Chem A. 2018 ;122(29):6147-6155.
Aleksandrov A, Lin F-Y, Roux B, Mackerell AD. Combining the polarizable Drude force field with a continuum electrostatic Poisson-Boltzmann implicit solvation model. J Comput Chem. 2018 .
Wu Y, Ma X, Pan Z, Kale SD, Song Y, King H, Zhang Q, Presley C, Deng X, Wei C-I, et al. Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew. BMC Genomics. 2018 ;19(1):705.
An J, Sun M, van Velzen R, Ji C, Zheng Z, Limpens E, Bisseling T, Deng X, Xiao S, Pan Z. Comparative transcriptome analysis of Poncirus trifoliata identifies a core set of genes involved in arbuscular mycorrhizal symbiosis. J Exp Bot. 2018 ;69(21):5255-5264.
König G, Pickard FC, Huang J, Thiel W, Mackerell AD, Brooks BR, York DM. A Comparison of QM/MM Simulations with and without the Drude Oscillator Model Based on Hydration Free Energies of Simple Solutes. Molecules. 2018 ;23(10).
Guest JD, Pierce BG. Computational Modeling of Hepatitis C Virus Envelope Glycoprotein Structure and Recognition. Front Immunol. 2018 ;9:1117.
S Hasan S, Sun C, Kim AS, Watanabe Y, Chen C-L, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, et al. Cryo-EM Structures of Eastern Equine Encephalitis Virus Reveal Mechanisms of Virus Disassembly and Antibody Neutralization. Cell Rep. 2018 ;25(11):3136-3147.e5.
D Gallagher T, Karageorgos I, Hudgens JW, Galvin CV. Data on crystal organization in the structure of the Fab fragment from the NIST reference antibody, RM 8671. Data Brief. 2018 ;16:29-36.
Sun D, Lakkaraju SKaushik, Jo S, Mackerell AD. Determination of Ionic Hydration Free Energies with Grand Canonical Monte Carlo/Molecular Dynamics Simulations in Explicit Water. J Chem Theory Comput. 2018 .
Mouchahoir T, Schiel JE. Development of an LC-MS/MS peptide mapping protocol for the NISTmAb. Anal Bioanal Chem. 2018 ;410(8):2111-2126.