IBBR Publications

Gowthaman R, Pierce BG. TCRmodel: high resolution modeling of T cell receptors from sequence. Nucleic Acids Res. 2018 .

Chu S, Brown AD, Culver JN, Ghodssi R. Tobacco Mosaic Virus as a Versatile Platform for Molecular Assembly and Device Fabrication. Biotechnol J. 2018 :e1800147.

Wilder PT, Weber DJ, Winstead A, Parnell S, Hinton TV, Stevenson M, Giri D, Azemati S, Olczak P, Powell BV, et al. Unprecedented anticancer activities of organorhenium sulfonato and carboxylato complexes against hormone-dependent MCF-7 and hormone-independent triple-negative MDA-MB-231 breast cancer cells. Mol Cell Biochem. 2018 ;441(1-2):151-163.

Chandonia J-M, Adhikari A, Carraro M, Chhibber A, Cutting GR, Fu Y, Gasparini A, Jones DT, Kramer A, Kundu K, et al. 3Lessons from the CAGI-4 Hopkins clinical panel challenge. Hum Mutat. 2017 .

Melville Z, Hernández-Ochoa EO, Pratt SJP, Liu Y, Pierce AD, Wilder PT, Adipietro KA, Breysse DH, Varney KM, Schneider MF, et al. The Activation of Protein Kinase A by the Calcium-Binding Protein S100A1 Is Independent of Cyclic AMP. Biochemistry. 2017 ;56(17):2328-2337.

Temoҫin Z, Kim E, Li J, Panzella L, Alfieri MLaura, Napolitano A, Kelly DL, Bentley WE, Payne GF. The Analgesic Acetaminophen and the Antipsychotic Clozapine can each Redox-Cycle with Melanin. ACS Chem Neurosci. 2017 .

Brinson RG, Ghasriani H, Hodgson DJ, Adams KM, McEwen I, Freedberg DI, Chen K, Keire DA, Aubin Y, Marino JP. Application of 2D-NMR with room temperature NMR probes for the assessment of the higher order structure of filgrastim. J Pharm Biomed Anal. 2017 ;141:229-233.

Wang T, Anderson KW, Turko IV. Assessment of Extracellular Vesicles Purity Using Proteomic Standards. Anal Chem [Internet]. 2017 ;89(20). Available from: http://pubs.acs.org/doi/10.1021/acs.analchem.7b03119

Borrman T, Cimons J, Cosiano M, Purcaro M, Pierce BG, Baker BM, Weng Z. ATLAS: A database linking binding affinities with structures for wild-type and mutant TCR-pMHC complexes. Proteins. 2017 .

Banis GE, Winkler T, Barton P, Chocron SE, Kim E, Kelly DL, Payne GF, Ben-Yoav H, Ghodssi R. The Binding Effect of Proteins on Medications and Its Impact on Electrochemical Sensing: Antipsychotic Clozapine as a Case Study. Pharmaceuticals (Basel). 2017 ;10(3).

Martinez AP, Qamar B, Fuerst TR, Muro S, Andrianov AK. Biodegradable "Smart" Polyphosphazenes with Intrinsic Multi-Functionality as Intracellular Protein Delivery Vehicles. Biomacromolecules. 2017 .

Zang F, Chu S, Gerasopoulos K, Culver JN, Ghodssi R. Biofabrication of Tobacco mosaic virus-nanoscaffolded supercapacitors via temporal capillary microfluidics. Nanotechnology. 2017 ;28(26):265301.

Burns LA, Faver JC, Zheng Z, Marshall MS, Smith DGA, Vanommeslaeghe K, Mackerell AD, Merz KM, C Sherrill D. The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions. J Chem Phys. 2017 ;147(16):161727.

Karageorgos I, Gallagher ES, Galvin C, D Gallagher T, Hudgens JW. Biophysical characterization and structure of the Fab fragment from the NIST reference antibody, RM 8671. Biologicals. 2017 .

Pal LR, Kundu K, Yin Y, Moult J. CAGI4 Crohn's exome challenge: Marker SNP versus exome variant models for assigning risk of Crohn disease. Hum Mutat. 2017 .

Pal LR, Kundu K, Yin Y, Moult J. CAGI4 SickKids clinical genomes challenge: A pipeline for identifying pathogenic variants. Hum Mutat. 2017 .

Zang F, Gerasopoulos K, Brown AD, Culver JN, Ghodssi R. Capillary microfluidics-assembled virus-like particle bio-nano-receptor interfaces for label-free biosensing. ACS Appl Mater Interfaces. 2017 .

Quigley J, V Hughitt K, Velikovsky CA, Mariuzza RA, El-Sayed NM, Briken V. The Cell Wall Lipid PDIM Contributes to Phagosomal Escape and Host Cell Exit of Mycobacterium tuberculosis. MBio. 2017 ;8(2).

Huang J, Rauscher S, Nawrocki G, Ran T, Feig M, de Groot BL, Grubmüller H, Mackerell AD. CHARMM36m: an improved force field for folded and intrinsically disordered proteins. Nat Methods. 2017 ;14(1):71-73.

Jo S, Cheng X, Lee J, Kim S, Park S-J, Patel DS, Beaven AH, Lee KIl, Rui H, Park S, et al. CHARMM-GUI 10 years for biomolecular modeling and simulation. J Comput Chem. 2017 ;38(15):1114-1124.

Kim J, Sinha S, Solomon M, Perez-Herrero E, Hsu J, Tsinas Z, Muro S. Co-coating of receptor-targeted drug nanocarriers with anti-phagocytic moieties enhances specific tissue uptake versus non-specific phagocytic clearance. Biomaterials. 2017 ;147:14-25.

Gao S, Linden SB, Nelson DC. Complete Genome Sequence of Klebsiella pneumoniae Phages SopranoGao, MezzoGao, and AltoGao. Genome Announc. 2017 ;5(45).

Yu W, Mackerell AD. Computer-Aided Drug Design Methods. Methods Mol Biol. 2017 ;1520:85-106.

Mazur SJ, Gallagher ES, Debnath S, Durell SR, Anderson KW, Jenkins LMMiller, Appella E, Hudgens JW. Conformational Changes in Active and Inactive States of Human PP2Cα Characterized by Hydrogen/Deuterium Exchange-Mass Spectrometry. Biochemistry [Internet]. 2017 . Available from: http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b01220

Yang M, Huang J, Simon R, Wang L-X, Mackerell AD. Conformational Heterogeneity of the HIV Envelope Glycan Shield. Sci Rep. 2017 ;7(1):4435.