IBBR Publications

Kim E, Li J, Kang M, Kelly DL, Chen S, Napolitano A, Panzella L, Shi X, Yan K, Wu S, et al. Redox Is a Global Biodevice Information Processing Modality. Proc IEEE Inst Electr Electron Eng. 2019 ;107(7):1402-1424.

VanArsdale E, Tsao C-Y, Liu Y, Chen C-Y, Payne GF, Bentley WE. Redox-based synthetic biology enables electrochemical detection of the herbicides dicamba and RoundupTM via rewired Escherichia coli. ACS Sens. 2019 .

Andreoletti G, Pal LR, Moult J, Brenner SE. Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation. Hum Mutat. 2019 .

Storz JF, Natarajan C, Signore AV, Witt CC, McCandlish DM, Stoltzfus A. The role of mutation bias in adaptive molecular evolution: insights from convergent changes in protein function. Philos Trans R Soc Lond B Biol Sci. 2019 ;374(1777):20180238.

Liu H, Qu X, Tan H, Song J, Lei M, Kim E, Payne GF, Liu C. Role of polydopamine's redox-activity on its pro-oxidant, radical-scavenging, and antimicrobial activities. Acta Biomater. 2019 .

O'Brochta DA, Alford R, Harrell R, Aluvihare C, Eappen AG, Li T, Chakravarty S, B Sim KLee, Hoffman SL, Billingsley PF. Is Saglin a mosquito salivary gland receptor for Plasmodium falciparum?. Malar J. 2019 ;18(1):2.

Donohue E, Khorsand S, Mercado G, Varney KM, Wilder PT, Yu W, Mackerell AD, Alexander P, Van QN, Moree B, et al. Second harmonic generation detection of Ras conformational changes and discovery of a small molecule binder. Proc Natl Acad Sci U S A. 2019 .

Tolman JR, Arbogast LW. Selective spin inversion in solution by magic field cross polarization. J Magn Reson. 2019 ;308:106588.

Lei D, Liu J, Liu H, Cleveland TE, Marino JP, Lei M, Ren G. Single-Molecule 3D Images of "Hole-Hole" IgG1 Homodimers by Individual-Particle Electron Tomography. Sci Rep. 2019 ;9(1):8864.

Heid E, Schmode S, Chatterjee P, Mackerell AD, Schröder C. Solvation dynamics: improved reproduction of the time-dependent Stokes shift with polarizable empirical force field chromophore models. Phys Chem Chem Phys. 2019 .

Callahan N, Tullman J, Kelman Z, Marino JP. Strategies for Development of a Next-Generation Protein Sequencing Platform. Trends Biochem Sci. 2019 .

Bester SM, Adipietro KA, Funk VL, Myslinski JM, Keul ND, Cheung J, Wilder PT, Wood ZA, Weber DJ, Height JJ, et al. The structural and biochemical impacts of monomerizing human acetylcholinesterase. Protein Sci. 2019 ;28(6):1106-1114.

Lin X, Kulkarni P, Bocci F, Schafer NP, Roy S, Tsai M-Y, He Y, Chen Y, Rajagopalan K, Mooney SM, et al. Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level. Biomolecules. 2019 ;9(2).

Mariuzza RA, Agnihotri P, Orban J. The structural basis of T cell receptor (TCR) activation: An enduring enigma. J Biol Chem. 2019 .

Schultz D, Brinson RG, Sari N, Fagan JA, Bergonzo C, Lin NJ, Dunkers JP. Structural insights into DNA-stabilized silver clusters. Soft Matter. 2019 .

D Gallagher T, McCullough C, Brinson RG, Ahn J, Marino JP, Dimasi N. Structure and Dynamics of a Site-Specific Labeled Fc Fragment with Altered Effector Functions. Pharmaceutics. 2019 ;11(10).

Mihailescu M, Sorci M, Seckute J, Silin VI, Hammer J, B Perrin S, Hernandez JI, Smajic N, Shrestha A, Bogardus KA, et al. Structure and Function in Antimicrobial Piscidins: Histidine Position, Directionality of Membrane Insertion, and pH-Dependent Permeabilization. J Am Chem Soc. 2019 .

Greenfield J, Shang X, Luo H, Zhou Y, Heselpoth RD, Nelson DC, Herzberg O. Structure and tailspike glycosidase machinery of ORF212 from E. coli O157:H7 phage CBA120 (TSP3). Sci Rep. 2019 ;9(1):7349.

Lepore R, Kryshtafovych A, Alahuhta M, Veraszto HArora, Bomble YJ, Bufton JC, Bullock AN, Caba C, Cao H, Davies OR, et al. Target highlights in CASP13: experimental target structures through the eyes of their authors. Proteins. 2019 .

Wilder PT, Varney KM, Weber DJ. Targeting S100 Calcium-Binding Proteins with Small Molecule Inhibitors. Methods Mol Biol. 2019 ;1929:291-310.

Gowthaman R, Pierce BG. TCR3d: The T cell receptor structural repertoire database. Bioinformatics. 2019 .

Kang M, Mun CW, Jung HSang, Ansah IBaffour, Kim E, Yang H, Payne GF, Kim D-H, Park S-G. Tethered molecular redox capacitors for nanoconfinement-assisted electrochemical signal amplification. Nanoscale. 2019 .

Heid E, Fleck M, Chatterjee P, Schröder C, Mackerell AD. Toward Prediction of Electrostatic Parameters for Force Fields That Explicitly Treat Electronic Polarization. J Chem Theory Comput. 2019 .

Collum TD, Stone AL, Sherman DJ, Rogers EE, Dardick C, Culver JN. Translatome profiling of plum pox virus infected leaves in European plum reveals temporal and spatial coordination of defense responses in phloem tissues. Mol Plant Microbe Interact. 2019 .

Roki N, Tsinas Z, Solomon M, Bowers J, Getts RC, Muro S. Unprecedently high targeting specificity toward lung ICAM-1 using 3DNA nanocarriers. J Control Release. 2019 ;305:41-49.