IBBR Publications

Found 2548 results
2016
Lakkaraju SKaushik, Lemkul JA, Huang J, Mackerell AD. DIRECT-ID: An automated method to identify and quantify conformational variations--application to β2 -adrenergic GPCR. J Comput Chem. 2016 ;37(4):416-25.
Senthilmurugan R, Ramamurthy VP, Njar VCO. Dissecting major signaling pathways in prostate cancer development and progression: Mechanisms and novel therapeutic targets. J Steroid Biochem Mol Biol. 2016 .
Ma X, Wang W-M, Bittner F, Schmidt N, Berkey R, Zhang L, King H, Zhang Y, Feng J, Wen Y, et al. Dual and Opposing Roles of Xanthine Dehydrogenase in Defense-Associated Reactive Oxygen Species Metabolism in Arabidopsis. Plant Cell. 2016 .
Peng X, Liu Y, Bentley WE, Payne GF. Electrochemical Fabrication of Functional Gelatin-Based Bioelectronic Interface. Biomacromolecules. 2016 .
Liu Z, Liu Y, Kim E, Bentley WE, Payne GF. Electrochemical Probing through a Redox Capacitor To Acquire Chemical Information on Biothiols. Anal Chem. 2016 .
Li J, Liu Y, Kim E, March JC, Bentley WE, Payne GF. Electrochemical Reverse Engineering: A Systems-Level Tool to Probe the Redox-Based Molecular Communication of Biology. Free Radic Biol Med. 2016 .
Yan K, Xiong Y, Wu S, Bentley WE, Deng H, Du Y, Payne GF, Shi X-W. Electro-molecular Assembly: Electrical Writing of Information into an Erasable Polysaccharide Medium. ACS Appl Mater Interfaces. 2016 .
Lemkul JA, Huang J, Roux B, Mackerell AD. An Empirical Polarizable Force Field Based on the Classical Drude Oscillator Model: Development History and Recent Applications. Chem Rev. 2016 ;116(9):4983-5013.
Zhang D-X, Nuss DL. Engineering super mycovirus donor strains of chestnut blight fungus by systematic disruption of multilocus vic genes. Proc Natl Acad Sci U S A. 2016 .
Zargar A, Quan DN, Bentley WE. Enhancing Intercellular Coordination: Rewiring Quorum Sensing Networks for Increased Protein Expression through Autonomous Induction. ACS Synth Biol. 2016 .
Sarkar A, Yu W, Desai UR, Mackerell AD, Mosier PD. Estimating glycosaminoglycan-protein interaction affinity: water dominates the specific antithrombin-heparin interaction. Glycobiology. 2016 ;26(10):1041-1047.
Wu H-C, Cha HJoon, Bentley WE. Evaluating Baculovirus Infection Using Green Fluorescent Protein and Variants. Methods Mol Biol. 2016 ;1350:447-459.
Da Silva SM, Vang LK, Olson ND, Lund SP, Downey AS, Kelman Z, Salit ML, Lin NJ, Morrow JB. Evaluation of microbial qPCR workflows using engineered Saccharomyces cerevisiae. Biomol Detect Quantif. 2016 ;7:27-33.
Kim E, Liu Y, Ben-Yoav H, Winkler TE, Yan K, Shi X, Shen J, Kelly DL, Ghodssi R, Bentley WE, et al. Fusing Sensor Paradigms to Acquire Chemical Information: An Integrative Role for Smart Biopolymeric Hydrogels. Adv Healthc Mater. 2016 .
Kwegyir-Afful AK, Murigi FN, Purushottamachar P, Ramamurthy VP, Martin MS, Njar VCO. Galeterone and its analogs inhibit Mnk-eIF4E axis, synergize with gemcitabine, impede pancreatic cancer cell migration, invasion and proliferation and inhibit tumor growth in mice. Oncotarget. 2016 .
Kwegyir-Afful AK, Bruno RD, Purushottamachar P, Murigi FN, Njar VCO. Galeterone and VNPT55 disrupts Mnk-eIF4E to inhibit prostate cancer cell migration and invasion. FEBS J. 2016 .
Wu H-C, March JC, Bentley WE. Gene Silencing in Insect Cells Using RNAi. Methods Mol Biol. 2016 ;1350:469-76.
Riley TP, Ayres CM, Hellman LM, Singh NK, Cosiano M, Cimons JM, Anderson MJ, Piepenbrink KH, Pierce BG, Weng Z, et al. A generalized framework for computational design and mutational scanning of T-cell receptor binding interfaces. Protein Eng Des Sel. 2016 .
Pierce BG, Keck Z-Y, Lau P, Fauvelle C, Gowthaman R, Baumert TF, Fuerst TR, Mariuzza RA, Foung SKH. Global mapping of antibody recognition of the hepatitis C virus E2 glycoprotein: Implications for vaccine design. Proc Natl Acad Sci U S A. 2016 .
Robalino J, Wu LP. Gutsy Microbes Fly High in the Antiviral War. Trends Microbiol. 2016 ;24(1):2-4.
Fauvelle C, Colpitts CC, Keck Z-Y, Pierce BG, Foung SKH, Baumert TF. Hepatitis C virus vaccine candidates inducing protective neutralizing antibodies. Expert Rev Vaccines. 2016 :1-10.
Wang Y, Sundling C, Wilson R, O'Dell S, Chen Y, Dai K, Phad GE, Zhu J, Xiao Y, Mascola JR, et al. High-Resolution Longitudinal Study of HIV-1 Env Vaccine-Elicited B Cell Responses to the Virus Primary Receptor Binding Site Reveals Affinity Maturation and Clonal Persistence. J Immunol. 2016 .
Schermerhorn KM, Tanner N, Kelman Z, Gardner AF. High-temperature single-molecule kinetic analysis of thermophilic archaeal MCM helicases. Nucleic Acids Res. 2016 .
Chen Y, Wilson R, O'Dell S, Guenaga J, Feng Y, Tran K, Chiang C-I, Arendt HE, DeStefano J, Mascola JR, et al. An HIV-1 Env-Antibody Complex Focuses Antibody Responses to Conserved Neutralizing Epitopes. J Immunol. 2016 ;197(10):3982-3998.
Dai K, Khan SN, Wang Y, He L, Guenaga J, Ingale J, Sundling C, O'Dell S, McKee K, Phad G, et al. HIV-1 Vaccine-elicited Antibodies Reverted to Their Inferred Naive Germline Reveal Associations between Binding Affinity and in vivo Activation. Sci Rep. 2016 ;6:20987.