Publications

Marc S. Collett (23 May 1951-11 June 2022): the Battle against Viral Disease Has Lost a Valiant Warrior, and the World Has Lost a Splendid Human Being.
Glassman KF, Brugge JS, Purchio AF, Kakach LT, Fuerst TR, Woods RM, Stover CK, Chunduru SK, Hincks JR, McKinlay MA, et al. 2022. Marc S. Collett (23 May 1951-11 June 2022): the Battle against Viral Disease Has Lost a Valiant Warrior, and the World Has Lost a Splendid Human Being. Journal of virology : e0164322. DOI: 10.1128/jvi.01643-22
Isolation protocols and mitochondrial content for plasma extracellular vesicles.
Nguyen A, Turko IV, Nguyen A, Turko IV. 2022. Isolation protocols and mitochondrial content for plasma extracellular vesicles. Analytical and bioanalytical chemistry : . DOI: 10.1007/s00216-022-04465-x
In silico identification of a β2-adrenoceptor allosteric site that selectively augments canonical β2AR-Gs signaling and function.
Shah SD, Lind C, De Pascali F, Penn RB, MacKerell AD, Deshpande DA, Shah SD, Lind C, De Pascali F, Penn RB, MacKerell AD, Deshpande DA. 2022. In silico identification of a β2-adrenoceptor allosteric site that selectively augments canonical β2AR-Gs signaling and function. Proceedings of the National Academy of Sciences of the United States of America 119(49): e2214024119. DOI: 10.1073/pnas.2214024119
Computer-Aided Drug Design: An Update.
Yu W, Weber DJ, MacKerell AD, Yu W, Weber DJ, MacKerell AD. 2023. Computer-Aided Drug Design: An Update. Methods in molecular biology (Clifton, N.J.) 2601: 123-152. DOI: 10.1007/978-1-0716-2855-3_7
Assessing Antigen-Adjuvant Complex Stability Against Physical Stresses By wNMR.
Taraban MB, Briggs KT, Yu YB, Jones MT, Rosner L, Bhambhani A, Williams DM, Farrell C, Reibarkh M, Su Y, Taraban MB, Briggs KT, Yu YB, Jones MT, Rosner L, Bhambhani A, Williams DM, Farrell C, Reibarkh M, Su Y. 2022. Assessing Antigen-Adjuvant Complex Stability Against Physical Stresses By wNMR. Pharmaceutical research : . DOI: 10.1007/s11095-022-03437-1
Cooperative binding of T cell receptor and CD4 to peptide-MHC enhances antigen sensitivity.
Rushdi MN, Pan V, Li K, Choi HK, Travaglino S, Hong J, Griffitts F, Agnihotri P, Mariuzza RA, Ke Y, et al. 2022. Cooperative binding of T cell receptor and CD4 to peptide-MHC enhances antigen sensitivity. Nature communications 13(1): 7055. DOI: 10.1038/s41467-022-34587-w
A round-robin approach provides a detailed assessment of biomolecular small-angle scattering data reproducibility and yields consensus curves for benchmarking.
Trewhella J, Vachette P, Bierma J, Blanchet C, Brookes E, Chakravarthy S, Chatzimagas L, Cleveland TE, Cowieson N, Crossett B, et al. 2022. A round-robin approach provides a detailed assessment of biomolecular small-angle scattering data reproducibility and yields consensus curves for benchmarking. Acta crystallographica. Section D, Structural biology 78(Pt 11): 1315-1336. DOI: 10.1107/S2059798322009184
Enhanced electrochemical measurement of β-galactosidase activity in whole cells by coexpression of lactose permease, LacY.
VanArsdale E, Pitzer J, Wang S, Stephens K, Chen CY, Payne GF, Bentley WE, VanArsdale E, Pitzer J, Wang S, Stephens K, Chen CY, Payne GF, Bentley WE. 2022. Enhanced electrochemical measurement of β-galactosidase activity in whole cells by coexpression of lactose permease, LacY. BioTechniques : . DOI: 10.2144/btn-2022-0090
Unravelling viral dynamics through molecular dynamics simulations - A brief overview.
Borkotoky S, Dey D, Hazarika Z, Joshi A, Tripathi K, Borkotoky S, Dey D, Hazarika Z, Joshi A, Tripathi K. 2022. Unravelling viral dynamics through molecular dynamics simulations - A brief overview. Biophysical chemistry 291: 106908. DOI: 10.1016/j.bpc.2022.106908
Factors Controlling Degradation of Biologically Relevant Synthetic Polymers in Solution and Solid State.
Brito J, Andrianov AK, Sukhishvili SA, Brito J, Andrianov AK, Sukhishvili SA. 2022. Factors Controlling Degradation of Biologically Relevant Synthetic Polymers in Solution and Solid State. ACS applied bio materials : . DOI: 10.1021/acsabm.2c00694
Single Step Assembly of Janus Porous Biomaterial by Sub-Ambient Temperature Electrodeposition.
Lei M, Liao H, Wang S, Zhou H, Zhao Z, Payne GF, Qu X, Liu C, Lei M, Liao H, Wang S, Zhou H, Zhao Z, Payne GF, Qu X, Liu C. 2022. Single Step Assembly of Janus Porous Biomaterial by Sub-Ambient Temperature Electrodeposition. Small (Weinheim an der Bergstrasse, Germany) : e2204837. DOI: 10.1002/smll.202204837
Spectral Similarity: Full-Wavelength Range Calibration of Circular Dichroism Spectroscopy.
Meuse CW, Rubinson KA, Meuse CW, Rubinson KA. 2022. Spectral Similarity: Full-Wavelength Range Calibration of Circular Dichroism Spectroscopy. Applied spectroscopy : 37028221134128. DOI: 10.1177/00037028221134128
Structural Fingerprinting of Antisense Oligonucleotide Therapeutics by Solution NMR Spectroscopy.
Becette OB, Marino JP, Brinson RG, Becette OB, Marino JP, Brinson RG. 2022. Structural Fingerprinting of Antisense Oligonucleotide Therapeutics by Solution NMR Spectroscopy. Pharmaceutical research : . DOI: 10.1007/s11095-022-03403-x
Mucosal nanobody IgA as inhalable and affordable prophylactic and therapeutic treatment against SARS-CoV-2 and emerging variants.
Li Q, Humphries F, Girardin RC, Wallace A, Ejemel M, Amcheslavsky A, McMahon CT, Schiller ZA, Ma Z, Cruz J, et al. 2022. Mucosal nanobody IgA as inhalable and affordable prophylactic and therapeutic treatment against SARS-CoV-2 and emerging variants. Frontiers in immunology 13: 995412. DOI: 10.3389/fimmu.2022.995412
Antibody interfaces revealed through structural mining.
Yin Y, Romei MG, Sankar K, Pal LR, Hoi KH, Yang Y, Leonard B, De Leon Boenig G, Kumar N, Matsumoto M, et al. 2022. Antibody interfaces revealed through structural mining. Computational and structural biotechnology journal 20: 4952-4968. DOI: 10.1016/j.csbj.2022.08.048
Scaffold hopping from indoles to indazoles yields dual MCL-1/BCL-2 inhibitors from MCL-1 selective leads.
Drennen B, Goodis CC, Bowen N, Yu W, Vickers G, Wilder PT, MacKerell AD, Fletcher S, Drennen B, Goodis CC, Bowen N, Yu W, Vickers G, Wilder PT, MacKerell AD, Fletcher S. 2022. Scaffold hopping from indoles to indazoles yields dual MCL-1/BCL-2 inhibitors from MCL-1 selective leads. RSC medicinal chemistry 13(8): 963-969. DOI: 10.1039/d2md00095d
Novel AR/AR-V7 and Mnk1/2 Degrader, VNPP433-3β: Molecular Mechanisms of Action and Efficacy in AR-Overexpressing Castration Resistant Prostate Cancer In Vitro and In Vivo Models.
Thomas E, Thankan RS, Purushottamachar P, Huang W, Kane MA, Zhang Y, Ambulos NP, Weber DJ, Njar VCO, Thomas E, Thankan RS, Purushottamachar P, Huang W, Kane MA, Zhang Y, Ambulos NP, Weber DJ, Njar VCO. 2022. Novel AR/AR-V7 and Mnk1/2 Degrader, VNPP433-3β: Molecular Mechanisms of Action and Efficacy in AR-Overexpressing Castration Resistant Prostate Cancer In Vitro and In Vivo Models. Cells 11(17): . DOI: 10.3390/cells11172699
Biopharmaceutical Manufacturing Readiness Levels (BRL) - A Shared Vocabulary for Biopharmaceutical Technology Development and Commercialization.
Kedia SB, Baker JC, Carbonell RG, Lee KH, Roberts CJ, Erickson J, Schiel JE, Rogers K, Schaefer G, Pluschkell S, Kedia SB, Baker JC, Carbonell RG, Lee KH, Roberts CJ, Erickson J, Schiel JE, Rogers K, Schaefer G, Pluschkell S. 2022. Biopharmaceutical Manufacturing Readiness Levels (BRL) - A Shared Vocabulary for Biopharmaceutical Technology Development and Commercialization. Biotechnology and bioengineering : . DOI: 10.1002/bit.28227
Attribute Analytics Performance Metrics from the MAM Consortium Interlaboratory Study.
Mouchahoir T, Schiel JE, Rogers R, Heckert A, Place BJ, Ammerman A, Li X, Robinson T, Schmidt B, Chumsae CM, et al. 2022. Attribute Analytics Performance Metrics from the MAM Consortium Interlaboratory Study. Journal of the American Society for Mass Spectrometry : . DOI: 10.1021/jasms.2c00129
Acclimation and Compensating Metabolite Responses to UV-B Radiation in Natural and Transgenic Populus spp. Defective in Lignin Biosynthesis.
Wong TM, Sullivan JH, Eisenstein E, Wong TM, Sullivan JH, Eisenstein E. 2022. Acclimation and Compensating Metabolite Responses to UV-B Radiation in Natural and Transgenic <i>Populus</i> spp. Defective in Lignin Biosynthesis. Metabolites 12(8): . DOI: 10.3390/metabo12080767