IBBR Publications

Sesterhenn F, Yang C, Bonet J, Cramer JT, Wen X, Wang Y, Chiang C-I, Abriata LA, Kucharska I, Castoro G, et al. De novo protein design enables the precise induction of RSV-neutralizing antibodies. Science. 2020 ;368(6492).

Padia J, Kulakova L, Galkin A, Herzberg O. Discovery and Preclinical Development of Antigiardiasis Fumagillol Derivatives. Antimicrob Agents Chemother. 2020 ;64(10).

Tamukong YB, Collum TD, Stone AL, Kappagantu M, Sherman DJ, Rogers EE, Dardick C, Culver JN. Dynamic changes impact the plum pox virus population structure during leaf and bud development. Virology. 2020 ;548:192-199.

Lin F-Y, Huang J, Pandey P, Rupakheti C, Li J, Roux B, Mackerell AD. Further Optimization and Validation of the Classical Drude Polarizable Protein Force Field. J Chem Theory Comput. 2020 .

Wen H, Li J, Payne GF, Feng Q, Liang M, Chen J, Dong H, Cao X. Hierarchical patterning via dynamic sacrificial printing of stimuli-responsive hydrogels. Biofabrication. 2020 .

Wu Y, Saski CA, Schnabel G, Xiao S, Hu M. A high-quality genome resource of Botrytis fragariae, a new and rapidly spreading fungal pathogen causing strawberry gray mold in the U.S.A. Phytopathology. 2020 .

Borrman T, Pierce BG, Vreven T, Baker BM, Weng Z. High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides. Bioinformatics. 2020 .

Easterhoff D, Pollara J, Luo K, Janus B, Gohain N, Williams LTD, Tay MZirui, Monroe A, Peachman K, Choe M, et al. HIV vaccine delayed boosting increases Env variable region 2-specific antibody effector functions. JCI Insight. 2020 ;5(2).

Galkin A, Chen Y, Guenaga J, O'Dell S, Acevedo R, Steinhardt JJ, Wang Y, Wilson R, Chiang C-I, Doria-Rose N, et al. HIV-1 gp120-CD4-Induced Antibody Complex Elicits CD4 Binding Site-Specific Antibody Response in Mice. J Immunol. 2020 .

Hauk P, Stephens K, Virgile C, VanArsdale E, Pottash AEli, Schardt JS, Jay SM, Sintim HO, Bentley WE. Homologous Quorum Sensing Regulatory Circuit: A Dual-Input Genetic Controller for Modulating Quorum Sensing-Mediated Protein Expression in . ACS Synth Biol. 2020 ;9(10):2692-2702.

Mackerell AD, Jo S, Lakkaraju SKaushik, Lind C, Yu W. Identification and characterization of fragment binding sites for allosteric ligand design using the site identification by ligand competitive saturation hotspots approach (SILCS-Hotspots). Biochim Biophys Acta Gen Subj. 2020 ;1864(4):129519.

Goel H, Yu W, Ustach VD, Aytenfisu AH, Sun D, Mackerell AD. Impact of electronic polarizability on protein-functional group interactions. Phys Chem Chem Phys. 2020 ;22(13):6848-6860.

Whitehead TA, Banta S, Bentley WE, Betenbaugh MJ, Chan C, Clark DS, Hoesli CA, Jewett MC, Junker B, Koffas M, et al. The Importance and Future of Biochemical Engineering. Biotechnol Bioeng. 2020 .

Yang Y, Zhang F, Zhou T, Fang A, Yu Y, Bi C, Xiao S. In silico identification of the full complement of subtilase-encoding genes and characterization of the role of TaSBT1.7 in resistance against stripe rust in wheat. Phytopathology. 2020 .

Andrianov AK, Marin A, Wang R, Chowdhury A, Agnihotri P, Yunus AS, Pierce BG, Mariuzza RA, Fuerst TR. In Vivo and In Vitro Potency of Polyphosphazene Immunoadjuvants with Hepatitis C Virus Antigen and the Role of Their Supramolecular Assembly. Mol Pharm. 2020 .

Manthe RL, Loeck M, Bhowmick T, Solomon M, Muro S. Intertwined mechanisms define transport of anti-ICAM nanocarriers across the endothelium and brain delivery of a therapeutic enzyme. J Control Release. 2020 ;324:181-193.

Tullman J, Marino JP, Kelman Z. Leveraging nature's biomolecular designs in next-generation protein sequencing reagent development. Appl Microbiol Biotechnol. 2020 .

Leman JKoehler, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, et al. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nat Methods. 2020 .

Lombard-Banek C, Schiel JE. Mass Spectrometry Advances and Perspectives for the Characterization of Emerging Adoptive Cell Therapies. Molecules. 2020 ;25(6).

Kognole AA, Mackerell AD. Mg Impacts the Twister Ribozyme through Push-Pull Stabilization of Nonsequential Phosphate Pairs. Biophys J. 2020 .

Gowthaman R, Pierce BG. Modeling and Viewing T Cell Receptors Using TCRmodel and TCR3d. Methods Mol Biol. 2020 ;2120:197-212.

Turko IV. A New Approach to Assess mAb Aggregation. Methods Mol Biol. 2020 ;2131:245-254.

Parvate AD, Vago F, S Hasan S, Lee J, Williams EP, Lanman J, Jonsson CB. A new inactivation method to facilitate cryo-EM of enveloped, RNA viruses requiring high containment: A case study using Venezuelan Equine Encephalitis Virus (VEEV). J Virol Methods. 2020 ;277:113792.

Mohanty A, Nam A, Pozhitkov A, Yang L, Srivastava S, Nathan A, Wu X, Mambetsariev I, Nelson M, Subbalakshmi AR, et al. A Non-genetic Mechanism Involving the Integrin β4/Paxillin Axis Contributes to Chemoresistance in Lung Cancer. iScience. 2020 ;23(9):101496.

Chauhan J, Yu W, Cardinale S, Opperman TJ, Mackerell AD, Fletcher S, de Leeuw EPh. Optimization of a Benzothiazole Indolene Scaffold Targeting Bacterial Cell Wall Assembly. Drug Des Devel Ther. 2020 ;14:567-574.