IBBR Publications

Found 2530 results
2017
Wu H-C, Quan DN, Tsao C-Y, Liu Y, Terrell JL, Luo X, Yang J-C, Payne GF, Bentley WE. Cover Image, Volume 114, Number 1, January 2017. Biotechnol Bioeng. 2017 ;114(1):i.
Häcker I, Harrell RA, Eichner G, Pilitt KL, O'Brochta DA, Handler AM, Schetelig MF. Cre/lox-Recombinase-Mediated Cassette Exchange for Reversible Site-Specific Genomic Targeting of the Disease Vector, Aedes aegypti. Sci Rep. 2017 ;7:43883.
Moult J, Fidelis K, Kryshtafovych A, Schwede T, Tramontano A. Critical Assessment of Methods of Protein Structure Prediction (CASP) - Round XII. Proteins. 2017 .
Pidugu LSwarna Muk, Neu H, Wong TLok, Pozharski E, Molloy JL, Michel SLJ, Toth EA. Crystal structures of human 3-hydroxyanthranilate 3,4-dioxygenase with native and non-native metals bound in the active site. Acta Crystallogr D Struct Biol. 2017 ;73(Pt 4):340-348.
Mast N, Anderson KW, Lin JB, Li Y, Turko IV, Tatsuoka C, Bjorkhem I, Pikuleva IA. Cytochrome P450 27A1 Deficiency and Regional Differences in Brain Sterol Metabolism Cause Preferential Cholestanol Accumulation in the Cerebellum. J Biol Chem. 2017 .
Kundu K, Pal LR, Yin Y, Moult J. Determination of disease phenotypes and pathogenic variants from exome sequence data in the CAGI 4 gene panel challenge. Hum Mutat. 2017 .
Baliban SM, Yang M, Ramachandran G, Curtis B, Shridhar S, Laufer RS, Wang JY, Van Druff J, Higginson EE, Hegerle N, et al. Development of a glycoconjugate vaccine to prevent invasive Salmonella Typhimurium infections in sub-Saharan Africa. PLoS Negl Trop Dis. 2017 ;11(4):e0005493.
Lin F-Y, Mackerell AD. Do Halogen-Hydrogen Bond Donor Interactions Dominate the Favorable Contribution of Halogens to Ligand-Protein Binding?. J Phys Chem B. 2017 ;121(28):6813-6821.
Small MC, Aytenfisu AH, Lin F-Y, He X, Mackerell AD. Drude polarizable force field for aliphatic ketones and aldehydes, and their associated acyclic carbohydrates. J Comput Aided Mol Des. 2017 ;31(4):349-363.
Li H, Chowdhary J, Huang L, He X, Mackerell AD, Roux B. Drude Polarizable Force Field for Molecular Dynamics Simulations of Saturated and Unsaturated Zwitterionic Lipids. J Chem Theory Comput. 2017 .
Liu X, Liu H, Qu X, Lei M, Zhang C, Hong H, Payne GF, Liu C. Electrical signals triggered controllable formation of calcium-alginate film for wound treatment. J Mater Sci Mater Med. 2017 ;28(10):146.
Tschirhart T, Kim E, Mckay R, Ueda H, Wu H-C, Pottash AEli, Zargar A, Negrete A, Shiloach J, Payne GF, et al. Electronic control of gene expression and cell behaviour in Escherichia coli through redox signalling. Nat Commun. 2017 ;8:14030.
Hwang IYoung, Koh E, Wong A, March JC, Bentley WE, Lee YSeng, Chang MWook. Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models. Nat Commun. 2017 ;8:15028.
Garnacho C, Dhami R, Solomon M, Schuchman EH, Muro S. Enhanced Delivery and Effects of Acid Sphingomyelinase by ICAM-1-Targeted Nanocarriers in Type B Niemann-Pick Disease Mice. Mol Ther. 2017 .
Yin Y, Kundu K, Pal LR, Moult J. Ensemble variant interpretation methods to predict enzyme activity and assign pathogenicity in the CAGI4 NAGLU (Human N-acetyl-glucosaminidase) and UBE2I (Human SUMO-ligase) challenges. Hum Mutat. 2017 .
Huang J, Mei Y, König G, Simmonett AC, Pickard FC, Wu Q, Wang L-P, Mackerell AD, Brooks BR, Shao Y. An Estimation of Hybrid Quantum Mechanical Molecular Mechanical Polarization Energies for Small Molecules Using Polarizable Force-Field Approaches. J Chem Theory Comput. 2017 ;13(2):679-695.
E Raman P, Lakkaraju SKaushik, Denny RAldrin, Mackerell AD. Estimation of relative free energies of binding using pre-computed ensembles based on the single-step free energy perturbation and the site-identification by Ligand competitive saturation approaches. J Comput Chem. 2017 ;38(15):1238-1251.
Kryshtafovych A, Monastyrskyy B, Fidelis K, Moult J, Schwede T, Tramontano A. Evaluation of the template-based modeling in CASP12. Proteins. 2017 .
Cardenas MG, Oswald E, Yu W, Xue F, Mackerell AD, Melnick AM. The Expanding Role of the BCL6 Oncoprotein as a Cancer Therapeutic Target. Clin Cancer Res. 2017 ;23(4):885-893.
Ragaliauskas T, Mickevicius M, Rakovska B, Penkauskas T, Vanderah DJ, Heinrich F, Valincius G. Fast formation of low-defect-density tethered bilayers by fusion of multilamellar vesicles. Biochim Biophys Acta. 2017 .
Huang J, Mackerell AD. Force field development and simulations of intrinsically disordered proteins. Curr Opin Struct Biol. 2017 ;48:40-48.
Kwegyir-Afful AK, Murigi FN, Purushottamachar P, Ramamurthy VP, Martin MS, Njar VCO. Galeterone and its analogs inhibit Mnk-eIF4E axis, synergize with gemcitabine, impede pancreatic cancer cell migration, invasion and proliferation and inhibit tumor growth in mice. Oncotarget. 2017 ;8(32):52381-52402.
Burkhart BW, uboňová LČ, Heider MR, Kelman Z, Reeve JN, Santangelo TJ. The GAN exonuclease, or the flap endonuclease Fen1 and RNase HII are necessary for viability of Thermococcus kodakarensis. J Bacteriol. 2017 .
Chao KL, Kulakova L, Herzberg O. Gene polymorphism linked to increased asthma and IBD risk alters gasdermin-B structure, a sulfatide and phosphoinositide binding protein. Proc Natl Acad Sci U S A. 2017 ;114(7):E1128-E1137.
Gehring AM, Astling DP, Matsumi R, Burkhart BW, Kelman Z, Reeve JN, Jones KL, Santangelo TJ. Genome Replication in Thermococcus kodakarensis Independent of Cdc6 and an Origin of Replication. Front Microbiol. 2017 ;8:2084.