IBBR Publications

Found 2832 results
Tullman J, Marino JP, Kelman Z. Leveraging nature's biomolecular designs in next-generation protein sequencing reagent development. Appl Microbiol Biotechnol. 2020 .
Leman JKoehler, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, et al. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nat Methods. 2020 .
Lombard-Banek C, Schiel JE. Mass Spectrometry Advances and Perspectives for the Characterization of Emerging Adoptive Cell Therapies. Molecules. 2020 ;25(6).
Kognole AA, Mackerell AD. Mg Impacts the Twister Ribozyme through Push-Pull Stabilization of Nonsequential Phosphate Pairs. Biophys J. 2020 .
Gowthaman R, Pierce BG. Modeling and Viewing T Cell Receptors Using TCRmodel and TCR3d. Methods Mol Biol. 2020 ;2120:197-212.
Turko IV. A New Approach to Assess mAb Aggregation. Methods Mol Biol. 2020 ;2131:245-254.
Parvate AD, Vago F, S Hasan S, Lee J, Williams EP, Lanman J, Jonsson CB. A new inactivation method to facilitate cryo-EM of enveloped, RNA viruses requiring high containment: A case study using Venezuelan Equine Encephalitis Virus (VEEV). J Virol Methods. 2020 ;277:113792.
Chauhan J, Yu W, Cardinale S, Opperman TJ, Mackerell AD, Fletcher S, de Leeuw EPh. Optimization of a Benzothiazole Indolene Scaffold Targeting Bacterial Cell Wall Assembly. Drug Des Devel Ther. 2020 ;14:567-574.
Aleksandrov A, Roux B, Mackerell AD. p Calculations with the Polarizable Drude Force Field and Poisson-Boltzmann Solvation Model. J Chem Theory Comput. 2020 .
Nguyen VD, Nguyen TH, Tayeen ASaleh Md, H Laughinghouse D, Sánchez-Reyes LL, Wiggins J, Pontelli E, Mozzherin D, O'Meara B, Stoltzfus A. Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees. Evol Bioinform Online. 2020 ;16:1176934319899384.
Mahinthichaichan P, Tsai C-C, Payne GF, Shen J. Polyelectrolyte in Electric Field: Disparate Conformational Behavior along an Aminopolysaccharide Chain. ACS Omega. 2020 ;5(21):12016-12026.
Turchi M, Kognole AA, Kumar A, Cai Q, Lian G, Mackerell AD. Predicting Partition Coefficients of Neutral and Charged Solutes in the Mixed SLES-Fatty Acids Micellar System. J Phys Chem B. 2020 .
Brinson RG, K Elliott W, Arbogast LW, Sheen DA, Giddens JP, Marino JP, Delaglio F. Principal component analysis for automated classification of 2D spectra and interferograms of protein therapeutics: influence of noise, reconstruction details, and data preparation. J Biomol NMR. 2020 .
Andrianov AK, Marin A, Deng J, Fuerst TR. Protein-loaded soluble and nanoparticulate formulations of ionic polyphosphazenes and their interactions on molecular and cellular levels. Mater Sci Eng C Mater Biol Appl. 2020 ;106:110179.
Briggs KT, Taraban MB, Y Yu B. Quality assurance at the point-of-care: Noninvasively detecting vaccine freezing variability using water proton NMR. Vaccine. 2020 ;38(31):4853-4860.
Wang S, Payne GF, Bentley WE. Quorum Sensing Communication: Molecularly Connecting Cells, Their Neighbors, and Even Devices. Annu Rev Chem Biomol Eng. 2020 .
Conlon IL, Drennen B, Lanning ME, Hughes S, Rothhaas R, Wilder PT, Mackerell AD, Fletcher S. Rationally Designed Polypharmacology: α-Helix Mimetics as Dual Inhibitors of the Oncoproteins Mcl-1 and HDM2. ChemMedChem. 2020 .
Bhokisham N, VanArsdale E, Stephens KT, Hauk P, Payne GF, Bentley WE. A redox-based electrogenetic CRISPR system to connect with and control biological information networks. Nat Commun. 2020 ;11(1):2427.
Song J, Liu H, Lei M, Tan H, Chen Z, Antoshin A, Payne GF, Qu X, Liu C. Redox-Channeling Polydopamine-Ferrocene (PDA-Fc) Coating To Confer Context-Dependent and Photothermal Antimicrobial Activities. ACS Appl Mater Interfaces. 2020 .
Wu D, D Gallagher T, Gowthaman R, Pierce BG, Mariuzza RA. Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen. Nat Commun. 2020 ;11(1):2908.
Xu X, Godoy-Ruiz R, Adipietro KA, Peralta C, Ben-Hail D, Varney KM, Cook ME, Roth BM, Wilder PT, Cleveland T, et al. Structure of the cell-binding component of the binary toxin reveals a di-heptamer macromolecular assembly. Proc Natl Acad Sci U S A. 2020 .
Stephens K, Bentley WE. Synthetic Biology for Manipulating Quorum Sensing in Microbial Consortia. Trends Microbiol. 2020 .
Bhokisham N, Liu Y, Brown A, Payne GF, Culver J, Bentley WE. Transglutaminase-mediated assembly of multi-enzyme pathway onto TMV brush surfaces for synthesis of bacterial autoinducer-2. Biofabrication. 2020 .
Kelman LM, O'Dell WB, Kelman Z. Unwinding twenty years of the archaeal minichromosome maintenance helicase. J Bacteriol. 2020 .
Kappagantu M, Collum TD, Dardick C, Culver JN. Viral Hacks of the Plant Vasculature: The Role of Phloem Alterations in Systemic Virus Infection. Annu Rev Virol. 2020 .