IBBR Publications

Rhoads MK, Hauk P, Gupta V, Bookstaver ML, Stephens K, Payne GF, Bentley WE. Modification and Assembly of a Versatile Lactonase for Bacterial Quorum Quenching. Molecules. 2018 ;23(2).

Huang J, Lemkul JA, Eastman PK, Mackerell AD. Molecular dynamics simulations using the drude polarizable force field on GPUs with OpenMM: Implementation, validation, and benchmarks. J Comput Chem. 2018 .

Huang Y-Y, Zhang L-L, Ma X-F, Zhao Z-X, Zhao J-H, Zhao J-Q, Fan J, Li Y, He P, Xiao S, et al. Multiple intramolecular trafficking signals in RESISTANCE TO POWDERY MILDEW 8.2 are engaged in activation of cell death and defense. Plant J. 2018 .

Ashkar R, Bilheux HZ, Bordallo H, Briber R, Callaway DJE, Cheng X, Chu XQiang, Curtis JE, Dadmun M, Fenimore P, et al. Neutron scattering in the biological sciences: progress and prospects. Acta Crystallogr D Struct Biol. 2018 ;74(Pt 12):1129-1168.

Schiel JE, Turner A. The NISTmAb Reference Material 8671 lifecycle management and quality plan. Anal Bioanal Chem. 2018 ;410(8):2067-2078.

Schiel JE, Turner A, Mouchahoir T, Yandrofski K, Telikepalli S, King J, DeRose P, Ripple D, Phinney K. The NISTmAb Reference Material 8671 value assignment, homogeneity, and stability. Anal Bioanal Chem. 2018 ;410(8):2127-2139.

Zambrello MA, Schuyler AD, Maciejewski MW, Delaglio F, Bezsonova I, Hoch JC. Nonuniform Sampling in Multidimensional NMR for Improving Spectral Sensitivity. Methods. 2018 .

Boulanger E, Huang L, Rupakheti C, Mackerell AD, Roux B. Optimized Lennard-Jones Parameters for Druglike Small Molecules. J Chem Theory Comput. 2018 .

Lin X, Roy S, Jolly MKumar, Bocci F, Schafer NP, Tsai M-Y, Chen Y, He Y, Grishaev A, Weninger K, et al. PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer. J Mol Biol. 2018 .

Rangarajan S, He Y, Chen Y, Kerzic MC, Ma B, Gowthaman R, Pierce BG, Nussinov R, Mariuzza RA, Orban J. Peptide-MHC (pMHC) binding to a human antiviral T cell receptor induces long-range allosteric communication between pMHC- and CD3-binding sites. J Biol Chem. 2018 .

Jolly MKumar, Kulkarni P, Weninger K, Orban J, Levine H. Phenotypic Plasticity, Bet-Hedging, and Androgen Independence in Prostate Cancer: Role of Non-Genetic Heterogeneity. Front Oncol. 2018 ;8:50.

Reddy PT, Brinson RG, J Hoopes T, McClung C, Ke N, Kashi L, Berkmen M, Kelman Z. Platform development for expression and purification of stable isotope labeled monoclonal antibodies in Escherichia coli. MAbs. 2018 :1-11.

Mckay R, Ghodasra M, Schardt J, Quan D, Pottash AEli, Shang W, Jay SM, Payne GF, Chang MWook, March JC, et al. A platform of genetically engineered bacteria as vehicles for localized delivery of therapeutics: Toward applications for Crohn's disease. Bioeng Transl Med. 2018 ;3(3):209-221.

Lemkul JA, Mackerell AD. Polarizable force field for RNA based on the classical drude oscillator. J Comput Chem. 2018 ;39(32):2624-2646.

Brocke S, Degen A, Mackerell AD, Dutagaci B, Feig M. Prediction of Membrane Permeation of Drug Molecules by Combining an Implicit Membrane Model with Machine Learning. J Chem Inf Model. 2018 .

Reid W, Pilitt K, Alford R, Cervantes-Medina A, Yu H, Aluvihare C, Harrell R, O'Brochta DA. An Promoter-Trap: Augmenting Genome Annotation and Functional Genomics. G3 (Bethesda). 2018 .

Salgia R, Jolly MKumar, Dorff T, Lau C, Weninger K, Orban J, Kulkarni P. Prostate-Associated Gene 4 (PAGE4): Leveraging the Conformational Dynamics of a Dancing Protein Cloud as a Therapeutic Target. J Clin Med. 2018 ;7(6).

Wang T, Turko IV. Proteomic toolbox to standardize the separation of extracellular vesicles and lipoprotein particles. J Proteome Res. 2018 .

Turner A, Schiel JE. Qualification of NISTmAb charge heterogeneity control assays. Anal Bioanal Chem. 2018 ;410(8):2079-2093.

Cao C, Kim E, Liu Y, Kang M, Li J, Yin J-J, Liu H, Qu X, Liu C, Bentley WE, et al. Radical Scavenging Activities of Biomimetic Catechol-Chitosan Films. Biomacromolecules. 2018 .

Steinhardt JJ, Guenaga J, Turner HL, McKee K, Louder MK, O'Dell S, Chiang C-I, Lei L, Galkin A, Andrianov AK, et al. Rational design of a trispecific antibody targeting the HIV-1 Env with elevated anti-viral activity. Nat Commun. 2018 ;9(1):877.

Ramamurthy VP, Ramalingam S, Gediya LK, Njar VCO. The retinamide VNLG-152 inhibits AR/AR-V7 and MNK-eIF4Esignaling pathways to suppress EMT and castration-resistant prostate cancer xenograft growth. FEBS J. 2018 .

Winkler TE, Stevenson FO, Kim E, Kang M, Payne GF, Kelly DL, Ghodssi R. The Role of Microsystems Integration Towards Point-of-Care Clozapine Treatment Monitoring in Schizophrenia. IEEE Sens Lett. 2018 ;2(1).

Shang W, Liu Y, Kim E, Tsao C-Y, Payne GF, Bentley WE. Selective assembly and functionalization of miniaturized redox capacitor inside microdevices for microbial toxin and mammalian cell cytotoxicity analyses. Lab Chip. 2018 .

Arbogast LW, Delaglio F, Tolman JR, Marino JP. Selective suppression of excipient signals in 2D (1)H-(13)C methyl spectra of biopharmaceutical products. J Biomol NMR. 2018 .