IBBR Publications

Found 2611 results
2016
Riley TP, Singh NK, Pierce BG, Baker BM, Weng Z. Computational Reprogramming of T Cell Antigen Receptor Binding Properties. Methods Mol Biol. 2016 ;1414:305-18.
Wu H-C, Quan DN, Tsao C-Y, Liu Y, Terrell JL, Luo X, Yang J-C, Payne GF, Bentley WE. Conferring biological activity to native spider silk: A biofunctionalized protein-based microfiber. Biotechnol Bioeng. 2016 .
Huang J, Lakkaraju SKaushik, Coop A, Mackerell AD. Conformational Heterogeneity of Intracellular Loop 3 of the μ-opioid G-protein Coupled Receptor. J Phys Chem B. 2016 ;120(46):11897-11904.
Yu C-H, Pal LR, Moult J. Consensus Genome-Wide Expression Quantitative Trait Loci and Their Relationship with Human Complex Trait Disease. OMICS. 2016 ;20(7):400-14.
Borgia A, Zheng W, Buholzer K, Borgia MB, Schüler A, Hofmann H, Soranno A, Nettels D, Gast K, Grishaev A, et al. Consistent View of Polypeptide Chain Expansion in Chemical Denaturants from Multiple Experimental Methods. J Am Chem Soc. 2016 ;138(36):11714-26.
Zargar A, Quan DN, Abutaleb N, Choi E, Terrell JL, Payne GF, Bentley WE. Constructing 'quantized quorums' to guide emergent phenotypes through quorum quenching capsules. Biotechnol Bioeng. 2016 .
Moult J, Fidelis K, Kryshtafovych A, Schwede T, Tramontano A. Critical assessment of methods of protein structure prediction (CASP) - progress and new directions in Round XI. Proteins. 2016 .
Bhokisham N, Pakhchanian H, Quan D, Tschirhart T, Tsao C-Y, Payne GF, Bentley WE. Data on biochemical fluxes generated from biofabricated enzyme complexes assembled through engineered tags and microbial transglutaminase. Data Brief. 2016 ;8:1031-5.
Yang M, d'Ortoli TAngles, Säwén E, Jana M, Widmalm G, Mackerell AD. Delineating the conformational flexibility of trisaccharides from NMR spectroscopy experiments and computer simulations. Phys Chem Chem Phys. 2016 ;18(28):18776-94.
Soto C, Ofek GA, M Joyce G, Zhang B, McKee K, Longo NS, Yang Y, Huang J, Parks R, Eudailey J, et al. Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8. PLoS One. 2016 ;11(6):e0157409.
Pidugu LSwarna Muk, Mbimba JCEmmanuel, Ahmad M, Pozharski E, Sausville EA, Emadi A, Toth EA. A direct interaction between NQO1 and a chemotherapeutic dimeric naphthoquinone. BMC Struct Biol. 2016 ;16(1):1.
Servinsky MD, Terrell JL, Tsao C-Y, Wu H-C, Quan DN, Zargar A, Allen PC, Byrd CM, Sund CJ, Bentley WE. Directed assembly of a bacterial quorum. ISME J. 2016 ;10(1):158-69.
Lakkaraju SKaushik, Lemkul JA, Huang J, Mackerell AD. DIRECT-ID: An automated method to identify and quantify conformational variations--application to β2 -adrenergic GPCR. J Comput Chem. 2016 ;37(4):416-25.
Senthilmurugan R, Ramamurthy VP, Njar VCO. Dissecting major signaling pathways in prostate cancer development and progression: Mechanisms and novel therapeutic targets. J Steroid Biochem Mol Biol. 2016 .
Ma X, Wang W-M, Bittner F, Schmidt N, Berkey R, Zhang L, King H, Zhang Y, Feng J, Wen Y, et al. Dual and Opposing Roles of Xanthine Dehydrogenase in Defense-Associated Reactive Oxygen Species Metabolism in Arabidopsis. Plant Cell. 2016 .
Peng X, Liu Y, Bentley WE, Payne GF. Electrochemical Fabrication of Functional Gelatin-Based Bioelectronic Interface. Biomacromolecules. 2016 .
Liu Z, Liu Y, Kim E, Bentley WE, Payne GF. Electrochemical Probing through a Redox Capacitor To Acquire Chemical Information on Biothiols. Anal Chem. 2016 .
Li J, Liu Y, Kim E, March JC, Bentley WE, Payne GF. Electrochemical Reverse Engineering: A Systems-Level Tool to Probe the Redox-Based Molecular Communication of Biology. Free Radic Biol Med. 2016 .
Yan K, Xiong Y, Wu S, Bentley WE, Deng H, Du Y, Payne GF, Shi X-W. Electro-molecular Assembly: Electrical Writing of Information into an Erasable Polysaccharide Medium. ACS Appl Mater Interfaces. 2016 .
Lemkul JA, Huang J, Roux B, Mackerell AD. An Empirical Polarizable Force Field Based on the Classical Drude Oscillator Model: Development History and Recent Applications. Chem Rev. 2016 ;116(9):4983-5013.
Zhang D-X, Nuss DL. Engineering super mycovirus donor strains of chestnut blight fungus by systematic disruption of multilocus vic genes. Proc Natl Acad Sci U S A. 2016 .
Zargar A, Quan DN, Bentley WE. Enhancing Intercellular Coordination: Rewiring Quorum Sensing Networks for Increased Protein Expression through Autonomous Induction. ACS Synth Biol. 2016 .
Sarkar A, Yu W, Desai UR, Mackerell AD, Mosier PD. Estimating glycosaminoglycan-protein interaction affinity: water dominates the specific antithrombin-heparin interaction. Glycobiology. 2016 ;26(10):1041-1047.
Wu H-C, Cha HJoon, Bentley WE. Evaluating Baculovirus Infection Using Green Fluorescent Protein and Variants. Methods Mol Biol. 2016 ;1350:447-459.
Da Silva SM, Vang LK, Olson ND, Lund SP, Downey AS, Kelman Z, Salit ML, Lin NJ, Morrow JB. Evaluation of microbial qPCR workflows using engineered Saccharomyces cerevisiae. Biomol Detect Quantif. 2016 ;7:27-33.