Publications

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Structural Features of Antibody-Peptide Recognition.
Lee JH, Yin R, Ofek G, Pierce BG, Lee JH, Yin R, Ofek G, Pierce BG. 2022. Structural Features of Antibody-Peptide Recognition. Frontiers in immunology 13: 910367. DOI: 10.3389/fimmu.2022.910367
Selective C-Terminal Conjugation of Protease-Derived Native Peptides for Proteomic Measurements.
Xie T, Brady A, Velarde C, Vaccarello DN, Callahan NW, Marino JP, Orski SV, Xie T, Brady A, Velarde C, Vaccarello DN, Callahan NW, Marino JP, Orski SV. 2022. Selective C-Terminal Conjugation of Protease-Derived Native Peptides for Proteomic Measurements. Langmuir : the ACS journal of surfaces and colloids : . DOI: 10.1021/acs.langmuir.2c00359
Bacterial chemotaxis in static gradients quantified in a biopolymer membrane-integrated microfluidic platform.
Hu P, Ly KL, Pham LPH, Pottash AE, Sheridan K, Wu HC, Tsao CY, Quan D, Bentley WE, Rubloff GW, et al. 2022. Bacterial chemotaxis in static gradients quantified in a biopolymer membrane-integrated microfluidic platform. Lab on a chip : . DOI: 10.1039/d2lc00481j
CACHE (Critical Assessment of Computational Hit-finding Experiments): A public-private partnership benchmarking initiative to enable the development of computational methods for hit-finding.
Ackloo S, Al-Awar R, Amaro RE, Arrowsmith CH, Azevedo H, Batey RA, Bengio Y, Betz UAK, Bologa CG, Chodera JD, et al. 2022. CACHE (Critical Assessment of Computational Hit-finding Experiments): A public-private partnership benchmarking initiative to enable the development of computational methods for hit-finding. Nature reviews. Chemistry 6(4): 287-295. DOI: 10.1038/s41570-022-00363-z
Early human B cell signatures of the primary antibody response to mRNA vaccination.
Kardava L, Rachmaninoff N, Lau WW, Buckner CM, Trihemasava K, Blazkova J, Lopes de Assis F, Wang W, Zhang X, Wang Y, et al. 2022. Early human B cell signatures of the primary antibody response to mRNA vaccination. Proceedings of the National Academy of Sciences of the United States of America 119(28): e2204607119. DOI: 10.1073/pnas.2204607119
Accurate modeling of RNA hairpins through the explicit treatment of electronic polarizability with the classical Drude oscillator force field.
Sengul MY, MacKerell AD, Sengul MY, MacKerell AD. 2022. Accurate modeling of RNA hairpins through the explicit treatment of electronic polarizability with the classical Drude oscillator force field. Journal of computational biophysics and chemistry 21(4): 461-471. DOI: 10.1142/s2737416521420060
Network-based redox communication between abiotic interactive materials.
Li J, Zhao Z, Kim E, Rzasa JR, Zong G, Wang LX, Bentley WE, Payne GF, Li J, Zhao Z, Kim E, Rzasa JR, Zong G, Wang LX, Bentley WE, Payne GF. 2022. Network-based redox communication between abiotic interactive materials. iScience 25(7): 104548. DOI: 10.1016/j.isci.2022.104548
Chromatography at -30 °C for Reduced Back-Exchange, Reduced Carryover, and Improved Dynamic Range for Hydrogen-Deuterium Exchange Mass Spectrometry.
Anderson KW, Hudgens JW, Anderson KW, Hudgens JW. 2022. Chromatography at -30 °C for Reduced Back-Exchange, Reduced Carryover, and Improved Dynamic Range for Hydrogen-Deuterium Exchange Mass Spectrometry. Journal of the American Society for Mass Spectrometry : . DOI: 10.1021/jasms.2c00096
Large-scale synthesis of galeterone and lead next generation galeterone analog VNPP433-3β.
Purushottamachar P, Thomas E, Thankan RS, Rudchenko V, Huang G, Njar VCO, Purushottamachar P, Thomas E, Thankan RS, Rudchenko V, Huang G, Njar VCO. 2022. Large-scale synthesis of galeterone and lead next generation galeterone analog VNPP433-3β. Steroids : 109062. DOI: 10.1016/j.steroids.2022.109062
MYB308-mediated transcriptional activation of plasma membrane H + -ATPase 6 promotes iron uptake in citrus.
Fan Z, Wu Y, Zhao L, Fu L, Deng L, Deng J, Ding D, Xiao S, Deng X, Peng S, et al. 2022. MYB308-mediated transcriptional activation of plasma membrane H <b>+</b> -ATPase 6 promotes iron uptake in citrus. Horticulture research 9: uhac088. DOI: 10.1093/hr/uhac088
Novel deuterated Mnk1/2 protein degrader VNLG-152R analogs: Synthesis, In vitro Anti-TNBC activities and pharmacokinetics in mice.
Purushottamachar P, Thomas E, Thankan RS, Njar VCO, Purushottamachar P, Thomas E, Thankan RS, Njar VCO. 2022. Novel deuterated Mnk1/2 protein degrader VNLG-152R analogs: Synthesis, In vitro Anti-TNBC activities and pharmacokinetics in mice. European journal of medicinal chemistry 238: 114441. DOI: 10.1016/j.ejmech.2022.114441
Structural and biophysical properties of farnesylated KRas interacting with the chaperone SmgGDS-558.
Michalak DJ, Unger B, Lorimer E, Grishaev A, Williams CL, Heinrich F, Lösche M, Michalak DJ, Unger B, Lorimer E, Grishaev A, Williams CL, Heinrich F, Lösche M. 2022. Structural and biophysical properties of farnesylated KRas interacting with the chaperone SmgGDS-558. Biophysical journal : . DOI: 10.1016/j.bpj.2022.05.028
Hierarchically Structured, All-Aqueous-Coated Hydrophobic Surfaces with pH-Selective Droplet Transfer Capability.
Brito J, Asawa K, Marin A, Andrianov AK, Choi CH, Sukhishvili SA, Brito J, Asawa K, Marin A, Andrianov AK, Choi CH, Sukhishvili SA. 2022. Hierarchically Structured, All-Aqueous-Coated Hydrophobic Surfaces with pH-Selective Droplet Transfer Capability. ACS applied materials & interfaces : . DOI: 10.1021/acsami.2c04499
Interlaboratory Studies Using the NISTmAb to Advance Biopharmaceutical Structural Analytics.
Yandrofski K, Mouchahoir T, De Leoz ML, Duewer D, Hudgens JW, Anderson KW, Arbogast L, Delaglio F, Brinson RG, Marino JP, et al. 2022. Interlaboratory Studies Using the NISTmAb to Advance Biopharmaceutical Structural Analytics. Frontiers in molecular biosciences 9: 876780. DOI: 10.3389/fmolb.2022.876780
Conformational dynamics of the hepatitis B virus pre-genomic RNA on multiple time scales: implications for viral replication.
Olenginski LT, Kasprzak WK, Bergonzo C, Shapiro BA, Dayie TK, Olenginski LT, Kasprzak WK, Bergonzo C, Shapiro BA, Dayie TK. 2022. Conformational dynamics of the hepatitis B virus pre-genomic RNA on multiple time scales: implications for viral replication. Journal of molecular biology : 167633. DOI: 10.1016/j.jmb.2022.167633