Publications

An Antigenically Diverse, Representative Panel of Envelope Glycoproteins for Hepatitis C Virus Vaccine Development.
Salas JH, Urbanowicz RA, Guest JD, Frumento N, Figueroa A, Clark KE, Keck Z, Cowton VM, Cole SJ, Patel AH, et al. 2021. An Antigenically Diverse, Representative Panel of Envelope Glycoproteins for Hepatitis C Virus Vaccine Development. Gastroenterology : . DOI: 10.1053/j.gastro.2021.10.005
One dose of COVID-19 nanoparticle vaccine REVC-128 protects against SARS-CoV-2 challenge at two weeks post-immunization.
Gu M, Torres JL, Li Y, Van Ry A, Greenhouse J, Wallace S, Chiang CI, Pessaint L, Jackson AM, Porto M, et al. 2021. One dose of COVID-19 nanoparticle vaccine REVC-128 protects against SARS-CoV-2 challenge at two weeks post-immunization. Emerging microbes & infections 10(1): 2016-2029. DOI: 10.1080/22221751.2021.1994354
Development of CHARMM Additive Potential Energy Parameters for α-Methyl Amino Acids.
Pane AJ, Yu W, Aytenfisu A, Tunyi J, Venable RM, MacKerell AD, Pastor RW, Pane AJ, Yu W, Aytenfisu A, Tunyi J, Venable RM, MacKerell AD, Pastor RW. 2021. Development of CHARMM Additive Potential Energy Parameters for α-Methyl Amino Acids. The journal of physical chemistry. B 125(42): 11687-11696. DOI: 10.1021/acs.jpcb.1c07202
All vials are not the same: Potential role of vaccine quality in vaccine adverse reactions.
Bruce Yu Y, Taraban MB, Briggs KT, Bruce Yu Y, Taraban MB, Briggs KT. 2021. All vials are not the same: Potential role of vaccine quality in vaccine adverse reactions. Vaccine 39(45): 6565-6569. DOI: 10.1016/j.vaccine.2021.09.065
Sulforaphane covalently interacts with the transglutaminase 2 cancer maintenance protein to alter its structure and suppress its activity.
Rorke EA, Adhikary G, Szmacinski H, Lakowicz JR, Weber DJ, Godoy-Ruiz R, Puranik P, Keillor JW, Gates EWJ, Eckert RL, Rorke EA, Adhikary G, Szmacinski H, Lakowicz JR, Weber DJ, Godoy-Ruiz R, Puranik P, Keillor JW, Gates EWJ, Eckert RL. 2022. Sulforaphane covalently interacts with the transglutaminase 2 cancer maintenance protein to alter its structure and suppress its activity. Molecular carcinogenesis 61(1): 19-32. DOI: 10.1002/mc.23356
Physiologically Relevant Free Ca2+ Ion Concentrations Regulate STRA6-Calmodulin Complex Formation via the BP2 Region of STRA6.
Young BD, Varney KM, Wilder PT, Costabile BK, Pozharski E, Cook ME, Godoy-Ruiz R, Clarke OB, Mancia F, Weber DJ, Young BD, Varney KM, Wilder PT, Costabile BK, Pozharski E, Cook ME, Godoy-Ruiz R, Clarke OB, Mancia F, Weber DJ. 2021. Physiologically Relevant Free Ca2+ Ion Concentrations Regulate STRA6-Calmodulin Complex Formation via the BP2 Region of STRA6. Journal of molecular biology 433(22): 167272. DOI: 10.1016/j.jmb.2021.167272
3D-Printed electrochemical sensor-integrated transwell systems.
Ramiah Rajasekaran P, Chapin AA, Quan DN, Herberholz J, Bentley WE, Ghodssi R, Ramiah Rajasekaran P, Chapin AA, Quan DN, Herberholz J, Bentley WE, Ghodssi R. 2020. 3D-Printed electrochemical sensor-integrated transwell systems. Microsystems & nanoengineering 6: 100. DOI: 10.1038/s41378-020-00208-z
Electrochemical measurement of serotonin by Au-CNT electrodes fabricated on microporous cell culture membranes.
Chapin AA, Rajasekaran PR, Quan DN, Hu L, Herberholz J, Bentley WE, Ghodssi R, Chapin AA, Rajasekaran PR, Quan DN, Hu L, Herberholz J, Bentley WE, Ghodssi R. 2020. Electrochemical measurement of serotonin by Au-CNT electrodes fabricated on microporous cell culture membranes. Microsystems & nanoengineering 6: 90. DOI: 10.1038/s41378-020-00184-4
Editorial overview: Bioanalytical tools, techniques, and trailblazers offer insight to drive bioprocess development.
Rosenberg JN, Bentley WE, Betenbaugh MJ, Rosenberg JN, Bentley WE, Betenbaugh MJ. 2021. Editorial overview: Bioanalytical tools, techniques, and trailblazers offer insight to drive bioprocess development. Current opinion in biotechnology 71: iii-vi. DOI: 10.1016/j.copbio.2021.09.001
Target highlights in CASP14: Analysis of models by structure providers.
Alexander LT, Lepore R, Kryshtafovych A, Adamopoulos A, Alahuhta M, Arvin AM, Bomble YJ, Böttcher B, Breyton C, Chiarini V, et al. 2021. Target highlights in CASP14: Analysis of models by structure providers. Proteins 89(12): 1647-1672. DOI: 10.1002/prot.26247
Association of acute psychosocial stress with oxidative stress: Evidence from serum analysis.
Kim E, Zhao Z, Rzasa JR, Glassman M, Bentley WE, Chen S, Kelly DL, Payne GF, Kim E, Zhao Z, Rzasa JR, Glassman M, Bentley WE, Chen S, Kelly DL, Payne GF. 2021. Association of acute psychosocial stress with oxidative stress: Evidence from serum analysis. Redox biology 47: 102138. DOI: 10.1016/j.redox.2021.102138
Critical assessment of methods of protein structure prediction (CASP)-Round XIV.
Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J, Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J. 2021. Critical assessment of methods of protein structure prediction (CASP)-Round XIV. Proteins 89(12): 1607-1617. DOI: 10.1002/prot.26237
Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants.
Yin R, Guest JD, Taherzadeh G, Gowthaman R, Mittra I, Quackenbush J, Pierce BG, Yin R, Guest JD, Taherzadeh G, Gowthaman R, Mittra I, Quackenbush J, Pierce BG. 2021. Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants. PLoS computational biology 17(9): e1009380. DOI: 10.1371/journal.pcbi.1009380
Modeling SARS-CoV-2 proteins in the CASP-commons experiment.
Kryshtafovych A, Moult J, Billings WM, Della Corte D, Fidelis K, Kwon S, Olechnovič K, Seok C, Venclovas Č, Won J, et al. 2021. Modeling SARS-CoV-2 proteins in the CASP-commons experiment. Proteins 89(12): 1987-1996. DOI: 10.1002/prot.26231
Quantitative proteomic analysis for evaluating affinity isolation of extracellular vesicles.
Nguyen A, Wang T, Turko IV, Nguyen A, Wang T, Turko IV. 2021. Quantitative proteomic analysis for evaluating affinity isolation of extracellular vesicles. Journal of proteomics 249: 104359. DOI: 10.1016/j.jprot.2021.104359
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, et al. 2021. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Proteins 89(12): 1800-1823. DOI: 10.1002/prot.26222
The Structural Biology of Eastern Equine Encephalitis Virus, an Emerging Viral Threat.
Hasan SS, Dey D, Singh S, Martin M, Hasan SS, Dey D, Singh S, Martin M. 2021. The Structural Biology of Eastern Equine Encephalitis Virus, an Emerging Viral Threat. Pathogens (Basel, Switzerland) 10(8): . DOI: 10.3390/pathogens10080973
Computational models in the service of X-ray and cryo-electron microscopy structure determination.
Kryshtafovych A, Moult J, Albrecht R, Chang GA, Chao K, Fraser A, Greenfield J, Hartmann MD, Herzberg O, Josts I, et al. 2021. Computational models in the service of X-ray and cryo-electron microscopy structure determination. Proteins 89(12): 1633-1646. DOI: 10.1002/prot.26223
Genome Sequence Resource for Erysiphe necator NAFU1, a Grapevine Powdery Mildew Isolate Identified in Shaanxi Province of China.
Zhang X, Mu B, Cui K, Liu M, Ke G, Han Y, Wu Y, Xiao S, Wen YQ, Zhang X, Mu B, Cui K, Liu M, Ke G, Han Y, Wu Y, Xiao S, Wen YQ. 2021. Genome Sequence Resource for <i>Erysiphe necator</i> NAFU1, a Grapevine Powdery Mildew Isolate Identified in Shaanxi Province of China. Molecular plant-microbe interactions : MPMI : MPMI03210061A. DOI: 10.1094/MPMI-03-21-0061-A
The calcium-binding protein S100B reduces IL6 production in malignant melanoma via inhibition of RSK cellular signaling.
Alasady MJ, Terry AR, Pierce AD, Cavalier MC, Blaha CS, Adipietro KA, Wilder PT, Weber DJ, Hay N, Alasady MJ, Terry AR, Pierce AD, Cavalier MC, Blaha CS, Adipietro KA, Wilder PT, Weber DJ, Hay N. 2021. The calcium-binding protein S100B reduces IL6 production in malignant melanoma via inhibition of RSK cellular signaling. PloS one 16(8): e0256238. DOI: 10.1371/journal.pone.0256238