Publications

Overexpression of T-bet in HIV infection is associated with accumulation of B cells outside germinal centers and poor affinity maturation.
Austin JW, Buckner CM, Kardava L, Wang W, Zhang X, Melson VA, Swanson RG, Martins AJ, Zhou JQ, Hoehn KB, et al. 2019. Overexpression of T-bet in HIV infection is associated with accumulation of B cells outside germinal centers and poor affinity maturation. Science translational medicine 11(520): . DOI: 10.1126/scitranslmed.aax0904
Linker Editing of Pneumococcal Lysin ClyJ Conveys Improved Bactericidal Activity.
Yang H, Luo D, Etobayeva I, Li X, Gong Y, Wang S, Li Q, Xu P, Yin W, He J, et al. 2020. Linker Editing of Pneumococcal Lysin ClyJ Conveys Improved Bactericidal Activity. Antimicrobial agents and chemotherapy 64(2): . DOI: 10.1128/AAC.01610-19
Protein-loaded soluble and nanoparticulate formulations of ionic polyphosphazenes and their interactions on molecular and cellular levels.
Andrianov AK, Marin A, Deng J, Fuerst TR, Andrianov AK, Marin A, Deng J, Fuerst TR. 2020. Protein-loaded soluble and nanoparticulate formulations of ionic polyphosphazenes and their interactions on molecular and cellular levels. Materials science & engineering. C, Materials for biological applications 106: 110179. DOI: 10.1016/j.msec.2019.110179
Excision of 5-Carboxylcytosine by Thymine DNA Glycosylase.
Pidugu LS, Dai Q, Malik SS, Pozharski E, Drohat AC, Pidugu LS, Dai Q, Malik SS, Pozharski E, Drohat AC. 2019. Excision of 5-Carboxylcytosine by Thymine DNA Glycosylase. Journal of the American Chemical Society 141(47): 18851-18861. DOI: 10.1021/jacs.9b10376
Strategies for Development of a Next-Generation Protein Sequencing Platform.
Callahan N, Tullman J, Kelman Z, Marino J, Callahan N, Tullman J, Kelman Z, Marino J. 2020. Strategies for Development of a Next-Generation Protein Sequencing Platform. Trends in biochemical sciences 45(1): 76-89. DOI: 10.1016/j.tibs.2019.09.005
Matching whole genomes to rare genetic disorders: Identification of potential causative variants using phenotype-weighted knowledge in the CAGI SickKids5 clinical genomes challenge.
Pal LR, Kundu K, Yin Y, Moult J, Pal LR, Kundu K, Yin Y, Moult J. 2020. Matching whole genomes to rare genetic disorders: Identification of potential causative variants using phenotype-weighted knowledge in the CAGI SickKids5 clinical genomes challenge. Human mutation 41(2): 347-362. DOI: 10.1002/humu.23933
Galeterone and The Next Generation Galeterone Analogs, VNPP414 and VNPP433-3β Exert Potent Therapeutic Effects in Castration-/Drug-Resistant Prostate Cancer Preclinical Models In Vitro and In Vivo.
Kwegyir-Afful AK, Ramalingam S, Ramamurthy VP, Purushottamachar P, Murigi FN, Vasaitis TS, Huang W, Kane MA, Zhang Y, Ambulos N, et al. 2019. Galeterone and The Next Generation Galeterone Analogs, VNPP414 and VNPP433-3β Exert Potent Therapeutic Effects in Castration-/Drug-Resistant Prostate Cancer Preclinical Models In Vitro and In Vivo. Cancers 11(11): . DOI: 10.3390/cancers11111637
Structure and Dynamics of a Site-Specific Labeled Fc Fragment with Altered Effector Functions.
Gallagher DT, McCullough C, Brinson RG, Ahn J, Marino JP, Dimasi N, Gallagher DT, McCullough C, Brinson RG, Ahn J, Marino JP, Dimasi N. 2019. Structure and Dynamics of a Site-Specific Labeled Fc Fragment with Altered Effector Functions. Pharmaceutics 11(10): . DOI: 10.3390/pharmaceutics11100546
The host-defense peptide piscidin P1 reorganizes lipid domains in membranes and decreases activation energies in mechanosensitive ion channels.
Comert F, Greenwood A, Maramba J, Acevedo R, Lucas L, Kulasinghe T, Cairns LS, Wen Y, Fu R, Hammer J, et al. 2019. The host-defense peptide piscidin P1 reorganizes lipid domains in membranes and decreases activation energies in mechanosensitive ion channels. The Journal of biological chemistry 294(49): 18557-18570. DOI: 10.1074/jbc.RA119.010232
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, et al. 2019. Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment. Proteins 87(12): 1200-1221. DOI: 10.1002/prot.25838
Characterization of the internal translation initiation region in monoclonal antibodies expressed in Escherichia coli.
Leith EM, O'Dell WB, Ke N, McClung C, Berkmen M, Bergonzo C, Brinson RG, Kelman Z, Leith EM, O'Dell WB, Ke N, McClung C, Berkmen M, Bergonzo C, Brinson RG, Kelman Z. 2019. Characterization of the internal translation initiation region in monoclonal antibodies expressed in <i>Escherichia coli</i>. The Journal of biological chemistry 294(48): 18046-18056. DOI: 10.1074/jbc.RA119.011008
Critical assessment of methods of protein structure prediction (CASP)-Round XIII.
Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J, Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J. 2019. Critical assessment of methods of protein structure prediction (CASP)-Round XIII. Proteins 87(12): 1011-1020. DOI: 10.1002/prot.25823
Geometrical characterization of T cell receptor binding modes reveals class-specific binding to maximize access to antigen.
Singh NK, Abualrous ET, Ayres CM, Noé F, Gowthaman R, Pierce BG, Baker BM, Singh NK, Abualrous ET, Ayres CM, Noé F, Gowthaman R, Pierce BG, Baker BM. 2020. Geometrical characterization of T cell receptor binding modes reveals class-specific binding to maximize access to antigen. Proteins 88(3): 503-513. DOI: 10.1002/prot.25829
A Quality Improvement Approach to Increase Exercise Assessment in Survivors of Childhood Leukemia.
Coven SL, Bibart M, Frost R, Gallagher T, Guinipero T, Valasek AE, Olshefski R, Coven SL, Bibart M, Frost R, Gallagher T, Guinipero T, Valasek AE, Olshefski R. 2022. A Quality Improvement Approach to Increase Exercise Assessment in Survivors of Childhood Leukemia. Pediatric quality & safety 4(4): e198. DOI: 10.1097/pq9.0000000000000198
Rapid Electroformation of Biopolymer Gels in Prescribed Shapes and Patterns: A Simpler Alternative to 3-D Printing.
Gargava A, Ahn S, Bentley WE, Raghavan SR, Gargava A, Ahn S, Bentley WE, Raghavan SR. 2019. Rapid Electroformation of Biopolymer Gels in Prescribed Shapes and Patterns: A Simpler Alternative to 3-D Printing. ACS applied materials & interfaces 11(40): 37103-37111. DOI: 10.1021/acsami.9b12575
Flow Water Proton NMR: In-Line Process Analytical Technology for Continuous Biomanufacturing.
Taraban MB, Briggs KT, Merkel P, Yu YB, Taraban MB, Briggs KT, Merkel P, Yu YB. 2019. Flow Water Proton NMR: In-Line Process Analytical Technology for Continuous Biomanufacturing. Analytical chemistry 91(21): 13538-13546. DOI: 10.1021/acs.analchem.9b02622
Characterization of LysBC17, a Lytic Endopeptidase from Bacillus cereus.
Swift SM, Etobayeva IV, Reid KP, Waters JJ, Oakley BB, Donovan DM, Nelson DC, Swift SM, Etobayeva IV, Reid KP, Waters JJ, Oakley BB, Donovan DM, Nelson DC. 2019. Characterization of LysBC17, a Lytic Endopeptidase from <i>Bacillus cereus</i>. Antibiotics (Basel, Switzerland) 8(3): . DOI: 10.3390/antibiotics8030155
New Family of Water-Soluble Sulfo-Fluoro Polyphosphazenes and Their Assembly within Hemocompatible Nanocoatings.
Albright V, Marin A, Kaner P, Sukhishvili SA, Andrianov AK, Albright V, Marin A, Kaner P, Sukhishvili SA, Andrianov AK. 2019. New Family of Water-Soluble Sulfo-Fluoro Polyphosphazenes and Their Assembly within Hemocompatible Nanocoatings. ACS applied bio materials 2(9): 3897-3906. DOI: 10.1021/acsabm.9b00485
Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition.
Stephens K, Pozo M, Tsao CY, Hauk P, Bentley WE, Stephens K, Pozo M, Tsao CY, Hauk P, Bentley WE. 2019. Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition. Nature communications 10(1): 4129. DOI: 10.1038/s41467-019-12027-6
2D J-correlated proton NMR experiments for structural fingerprinting of biotherapeutics.
Brinson RG, Marino JP, Brinson RG, Marino JP. 2019. 2D J-correlated proton NMR experiments for structural fingerprinting of biotherapeutics. Journal of magnetic resonance (San Diego, Calif. : 1997) 307: 106581. DOI: 10.1016/j.jmr.2019.106581