Publications

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Bypass of the pre-60S ribosomal quality control as a pathway to oncogenesis.
Sulima SO, Patchett S, Advani VM, De Keersmaecker K, Johnson AW, Dinman JD. 2014. Bypass of the pre-60S ribosomal quality control as a pathway to oncogenesis. Proceedings of the National Academy of Sciences of the United States of America 111(15): 5640-5. DOI: 10.1073/pnas.1400247111
Molecular insights into the membrane-associated phosphatidylinositol 4-kinase IIα.
Zhou Q, Li J, Yu H, Zhai Y, Gao Z, Liu Y, Pang X, Zhang L, Schulten K, Sun F, et al. 2014. Molecular insights into the membrane-associated phosphatidylinositol 4-kinase IIα. Nature communications 5: 3552. DOI: 10.1038/ncomms4552
Crystal structure of ORF210 from E. coli O157:H1 phage CBA120 (TSP1), a putative tailspike protein.
Chen C, Bales P, Greenfield J, Heselpoth RD, Nelson DC, Herzberg O. 2014. Crystal structure of ORF210 from E. coli O157:H1 phage CBA120 (TSP1), a putative tailspike protein. PloS one 9(3): e93156. DOI: 10.1371/journal.pone.0093156
Context-dependent redox properties of natural phenolic materials.
Kim E, Liu Y, Leverage WT, Yin JJ, White IM, Bentley WE, Payne GF. 2014. Context-dependent redox properties of natural phenolic materials. Biomacromolecules 15(5): 1653-62. DOI: 10.1021/bm500026x
Coding for hydrogel organization through signal guided self-assembly.
Yan K, Ding F, Bentley WE, Deng H, Du Y, Payne GF, Shi XW. 2014. Coding for hydrogel organization through signal guided self-assembly. Soft matter 10(3): 465-9. DOI: 10.1039/c3sm52405a
T cell receptor bias for MHC: co-evolution or co-receptors?
Rangarajan S, Mariuzza RA. 2014. T cell receptor bias for MHC: co-evolution or co-receptors? Cellular and molecular life sciences : CMLS 71(16): 3059-68. DOI: 10.1007/s00018-014-1600-9
Evaluation of enhanced sampling provided by accelerated molecular dynamics with Hamiltonian replica exchange methods.
Roe DR, Bergonzo C, Cheatham TE. 2014. Evaluation of enhanced sampling provided by accelerated molecular dynamics with Hamiltonian replica exchange methods. The journal of physical chemistry. B 118(13): 3543-52. DOI: 10.1021/jp4125099
Complex formation between S100B protein and the p90 ribosomal S6 kinase (RSK) in malignant melanoma is calcium-dependent and inhibits extracellular signal-regulated kinase (ERK)-mediated phosphorylation of RSK.
Hartman KG, Vitolo MI, Pierce AD, Fox JM, Shapiro P, Martin SS, Wilder PT, Weber DJ. 2014. Complex formation between S100B protein and the p90 ribosomal S6 kinase (RSK) in malignant melanoma is calcium-dependent and inhibits extracellular signal-regulated kinase (ERK)-mediated phosphorylation of RSK. The Journal of biological chemistry 289(18): 12886-95. DOI: 10.1074/jbc.M114.561613
Single-cell and deep sequencing of IgG-switched macaque B cells reveal a diverse Ig repertoire following immunization.
Sundling C, Zhang Z, Phad GE, Sheng Z, Wang Y, Mascola JR, Li Y, Wyatt RT, Shapiro L, Karlsson Hedestam GB. 2014. Single-cell and deep sequencing of IgG-switched macaque B cells reveal a diverse Ig repertoire following immunization. Journal of immunology (Baltimore, Md. : 1950) 192(8): 3637-44. DOI: 10.4049/jimmunol.1303334
Site-Identification by Ligand Competitive Saturation (SILCS) assisted pharmacophore modeling.
Yu W, Lakkaraju SK, Raman EP, MacKerell AD. 2014. Site-Identification by Ligand Competitive Saturation (SILCS) assisted pharmacophore modeling. Journal of computer-aided molecular design 28(5): 491-507. DOI: 10.1007/s10822-014-9728-0
Improved cross validation of a static ubiquitin structure derived from high precision residual dipolar couplings measured in a drug-based liquid crystalline phase.
Maltsev AS, Grishaev A, Roche J, Zasloff M, Bax A. 2014. Improved cross validation of a static ubiquitin structure derived from high precision residual dipolar couplings measured in a drug-based liquid crystalline phase. Journal of the American Chemical Society 136(10): 3752-5. DOI: 10.1021/ja4132642
Interaction of apurinic/apyrimidinic endonuclease 2 (Apn2) with Myh1 DNA glycosylase in fission yeast.
Jin J, Hwang BJ, Chang PW, Toth EA, Lu AL. 2014. Interaction of apurinic/apyrimidinic endonuclease 2 (Apn2) with Myh1 DNA glycosylase in fission yeast. DNA repair 15: 1-10. DOI: 10.1016/j.dnarep.2014.01.001
Yeast telomere maintenance is globally controlled by programmed ribosomal frameshifting and the nonsense-mediated mRNA decay pathway.
Advani VM, Belew AT, Dinman JD. 2013. Yeast telomere maintenance is globally controlled by programmed ribosomal frameshifting and the nonsense-mediated mRNA decay pathway. Translation (Austin, Tex.) 1(1): e24418. DOI: 10.4161/trla.24418
Specific binding, uptake, and transport of ICAM-1-targeted nanocarriers across endothelial and subendothelial cell components of the blood-brain barrier.
Hsu J, Rappaport J, Muro S. 2014. Specific binding, uptake, and transport of ICAM-1-targeted nanocarriers across endothelial and subendothelial cell components of the blood-brain barrier. Pharmaceutical research 31(7): 1855-66. DOI: 10.1007/s11095-013-1289-8
Structural basis for inactivation of Giardia lamblia carbamate kinase by disulfiram.
Galkin A, Kulakova L, Lim K, Chen CZ, Zheng W, Turko IV, Herzberg O. 2014. Structural basis for inactivation of Giardia lamblia carbamate kinase by disulfiram. The Journal of biological chemistry 289(15): 10502-10509. DOI: 10.1074/jbc.M114.553123