Publications

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Evolution of a helper virus-derived, ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus.
Guo R, Meskauskas A, Dinman JD, Simon AE. 2011. Evolution of a helper virus-derived, ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus. Virology 419(1): 10-6. DOI: 10.1016/j.virol.2011.07.019
Cis-trans interactions of cell surface receptors: biological roles and structural basis.
Held W, Mariuzza RA. 2011. Cis-trans interactions of cell surface receptors: biological roles and structural basis. Cellular and molecular life sciences : CMLS 68(21): 3469-78. DOI: 10.1007/s00018-011-0798-z
A quantitative LC-MS/MS method for comparative analysis of capture-antibody affinity toward protein antigens.
Lowenthal MS, Gasca-Aragon H, Schiel JE, Dodder NG, Bunk DM. 2011. A quantitative LC-MS/MS method for comparative analysis of capture-antibody affinity toward protein antigens. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 879(26): 2726-32. DOI: 10.1016/j.jchromb.2011.07.037
Diffusion of small molecules inside a peptide hydrogel.
Feng Y, Lee M, Taraban M, Yu YB. 2011. Diffusion of small molecules inside a peptide hydrogel. Chemical communications (Cambridge, England) 47(37): 10455-7. DOI: 10.1039/c1cc13943f
Energetic preference of 8-oxoG eversion pathways in a DNA glycosylase.
Bergonzo C, Campbell AJ, de los Santos C, Grollman AP, Simmerling C. 2011. Energetic preference of 8-oxoG eversion pathways in a DNA glycosylase. Journal of the American Chemical Society 133(37): 14504-6. DOI: 10.1021/ja205142d
Anti-tumor effects of a novel retinoic acid metabolism blocking agent VN/14-1 in the N-methyl-N-nitrosourea-induced rat mammary carcinoma model and its effects on the uterus.
Goss PE, Qi S, Hu H, Gediya LK, Purushottamachar P, Godbole AM, Njar VC. 2012. Anti-tumor effects of a novel retinoic acid metabolism blocking agent VN/14-1 in the N-methyl-N-nitrosourea-induced rat mammary carcinoma model and its effects on the uterus. Breast cancer research and treatment 133(1): 137-44. DOI: 10.1007/s10549-011-1724-7
Endothelial targeting of antibody-decorated polymeric filomicelles.
Shuvaev VV, Ilies MA, Simone E, Zaitsev S, Kim Y, Cai S, Mahmud A, Dziubla T, Muro S, Discher DE, et al. 2011. Endothelial targeting of antibody-decorated polymeric filomicelles. ACS nano 5(9): 6991-9. DOI: 10.1021/nn2015453
A nuclear magnetic resonance based approach to accurate functional annotation of putative enzymes in the methanogen Methanosarcina acetivorans.
Chen Y, Apolinario E, Brachova L, Kelman Z, Li Z, Nikolau BJ, Showman L, Sowers K, Orban J. 2011. A nuclear magnetic resonance based approach to accurate functional annotation of putative enzymes in the methanogen Methanosarcina acetivorans. BMC genomics 12 Suppl 1: S7. DOI: 10.1186/1471-2164-12-S1-S7
Thermococcus kodakarensis encodes three MCM homologs but only one is essential.
Pan M, Santangelo TJ, Li Z, Reeve JN, Kelman Z. 2011. Thermococcus kodakarensis encodes three MCM homologs but only one is essential. Nucleic acids research 39(22): 9671-80. DOI: 10.1093/nar/gkr624
Light-activated ionic gelation of common biopolymers.
Javvaji V, Baradwaj AG, Payne GF, Raghavan SR. 2011. Light-activated ionic gelation of common biopolymers. Langmuir : the ACS journal of surfaces and colloids 27(20): 12591-6. DOI: 10.1021/la201860s
Structural and functional impact of cancer-related missense somatic mutations.
Shi Z, Moult J. 2011. Structural and functional impact of cancer-related missense somatic mutations. Journal of molecular biology 413(2): 495-512. DOI: 10.1016/j.jmb.2011.06.046
Effects on membrane lateral pressure suggest permeation mechanisms for bacterial quorum signaling molecules.
Kamaraju K, Smith J, Wang J, Roy V, Sintim HO, Bentley WE, Sukharev S. 2011. Effects on membrane lateral pressure suggest permeation mechanisms for bacterial quorum signaling molecules. Biochemistry 50(32): 6983-93. DOI: 10.1021/bi200684z
Synthesis and biological evaluations of putative metabolically stable analogs of VN/124-1 (TOK-001): head to head anti-tumor efficacy evaluation of VN/124-1 (TOK-001) and abiraterone in LAPC-4 human prostate cancer xenograft model.
Bruno RD, Vasaitis TS, Gediya LK, Purushottamachar P, Godbole AM, Ates-Alagoz Z, Brodie AM, Njar VC. 2011. Synthesis and biological evaluations of putative metabolically stable analogs of VN/124-1 (TOK-001): head to head anti-tumor efficacy evaluation of VN/124-1 (TOK-001) and abiraterone in LAPC-4 human prostate cancer xenograft model. Steroids 76(12): 1268-79. DOI: 10.1016/j.steroids.2011.06.002
Two functional S100A4 monomers are necessary for regulating nonmuscle myosin-IIA and HCT116 cell invasion.
House RP, Pozzuto M, Patel P, Dulyaninova NG, Li ZH, Zencheck WD, Vitolo MI, Weber DJ, Bresnick AR. 2011. Two functional S100A4 monomers are necessary for regulating nonmuscle myosin-IIA and HCT116 cell invasion. Biochemistry 50(32): 6920-32. DOI: 10.1021/bi200498q
Biofabrication of chitosan-silver composite SERS substrates enabling quantification of adenine by a spectroscopic shift.
Luo XL, Buckhout-White S, Bentley WE, Rubloff GW. 2011. Biofabrication of chitosan-silver composite SERS substrates enabling quantification of adenine by a spectroscopic shift. Biofabrication 3(3): 034108. DOI: 10.1088/1758-5082/3/3/034108