Publications

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Mass spectrometry characterization for chemoenzymatic glycoprotein synthesis.
Schiel JE, Lowenthal MS, Phinney KW. 2011. Mass spectrometry characterization for chemoenzymatic glycoprotein synthesis. Journal of mass spectrometry : JMS 46(7): 649-57. DOI: 10.1002/jms.1934
Extension of a three-helix bundle domain of myosin VI and key role of calmodulins.
Liu Y, Hsin J, Kim H, Selvin PR, Schulten K. 2011. Extension of a three-helix bundle domain of myosin VI and key role of calmodulins. Biophysical journal 100(12): 2964-73. DOI: 10.1016/j.bpj.2011.05.010
Molecular basis of a million-fold affinity maturation process in a protein-protein interaction.
Bonsor DA, Postel S, Pierce BG, Wang N, Zhu P, Buonpane RA, Weng Z, Kranz DM, Sundberg EJ. 2011. Molecular basis of a million-fold affinity maturation process in a protein-protein interaction. Journal of molecular biology 411(2): 321-8. DOI: 10.1016/j.jmb.2011.06.009
Microfluidic electrochemical sensor array for characterizing protein interactions with various functionalized surfaces.
Dykstra PH, Roy V, Byrd C, Bentley WE, Ghodssi R. 2011. Microfluidic electrochemical sensor array for characterizing protein interactions with various functionalized surfaces. Analytical chemistry 83(15): 5920-7. DOI: 10.1021/ac200835s
Biocompatible multi-address 3D cell assembly in microfluidic devices using spatially programmable gel formation.
Cheng Y, Luo X, Tsao CY, Wu HC, Betz J, Payne GF, Bentley WE, Rubloff GW. 2011. Biocompatible multi-address 3D cell assembly in microfluidic devices using spatially programmable gel formation. Lab on a chip 11(14): 2316-8. DOI: 10.1039/c1lc20306a
An extensive network of information flow through the B1b/c intersubunit bridge of the yeast ribosome.
Rhodin MH, Dinman JD. 2011. An extensive network of information flow through the B1b/c intersubunit bridge of the yeast ribosome. PloS one 6(5): e20048. DOI: 10.1371/journal.pone.0020048
Identification and quantification of DNA repair proteins by liquid chromatography/isotope-dilution tandem mass spectrometry using their fully 15N-labeled analogues as internal standards.
Dizdaroglu M, Reddy PT, Jaruga P. 2011. Identification and quantification of DNA repair proteins by liquid chromatography/isotope-dilution tandem mass spectrometry using their fully 15N-labeled analogues as internal standards. Journal of proteome research 10(8): 3802-13. DOI: 10.1021/pr200269j
Fluorinated paramagnetic chelates as potential multi-chromic 19F tracer agents.
Jiang ZX, Feng Y, Yu YB. 2011. Fluorinated paramagnetic chelates as potential multi-chromic 19F tracer agents. Chemical communications (Cambridge, England) 47(25): 7233-5. DOI: 10.1039/c1cc11150g
A rapid, inexpensive yeast-based dual-fluorescence assay of programmed--1 ribosomal frameshifting for high-throughput screening.
Rakauskaite R, Liao PY, Rhodin MH, Lee K, Dinman JD. 2011. A rapid, inexpensive yeast-based dual-fluorescence assay of programmed--1 ribosomal frameshifting for high-throughput screening. Nucleic acids research 39(14): e97. DOI: 10.1093/nar/gkr382
Electroaddressing agarose using Fmoc-phenylalanine as a temporary scaffold.
Liu Y, Cheng Y, Wu HC, Kim E, Ulijn RV, Rubloff GW, Bentley WE, Payne GF. 2011. Electroaddressing agarose using Fmoc-phenylalanine as a temporary scaffold. Langmuir : the ACS journal of surfaces and colloids 27(12): 7380-4. DOI: 10.1021/la201541c
The central core region of yeast ribosomal protein L11 is important for subunit joining and translational fidelity.
Rhodin MH, Rakauskaitė R, Dinman JD. 2011. The central core region of yeast ribosomal protein L11 is important for subunit joining and translational fidelity. Molecular genetics and genomics : MGG 285(6): 505-16. DOI: 10.1007/s00438-011-0623-2
High throughput structural analysis of yeast ribosomes using hSHAPE.
Leshin JA, Heselpoth R, Belew AT, Dinman J. 2011. High throughput structural analysis of yeast ribosomes using hSHAPE. RNA biology 8(3): 478-87.
Isolevuglandins and mitochondrial enzymes in the retina: mass spectrometry detection of post-translational modification of sterol-metabolizing CYP27A1.
Charvet C, Liao WL, Heo GY, Laird J, Salomon RG, Turko IV, Pikuleva IA. 2011. Isolevuglandins and mitochondrial enzymes in the retina: mass spectrometry detection of post-translational modification of sterol-metabolizing CYP27A1. The Journal of biological chemistry 286(23): 20413-22. DOI: 10.1074/jbc.M111.232546
Association of the Tobacco mosaic virus 126kDa replication protein with a GDI protein affects host susceptibility.
Kramer SR, Goregaoker SP, Culver JN. 2011. Association of the Tobacco mosaic virus 126kDa replication protein with a GDI protein affects host susceptibility. Virology 414(2): 110-8. DOI: 10.1016/j.virol.2010.12.030
Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements.
Chen C, Gorlatova N, Kelman Z, Herzberg O. 2011. Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements. Proceedings of the National Academy of Sciences of the United States of America 108(16): 6456-61. DOI: 10.1073/pnas.1013657108