Publications

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Drude Polarizable Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for Saturated and Monounsaturated Zwitterionic Lipids.
Yu Y, Venable RM, Thirman J, Chatterjee P, Kumar A, Pastor RW, Roux B, MacKerell AD, Klauda JB. 2023. Drude Polarizable Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for Saturated and Monounsaturated Zwitterionic Lipids. Journal of chemical theory and computation : . DOI: 10.1021/acs.jctc.3c00203
Site Identification by Ligand Competitive Saturation-Biologics Approach for Structure-Based Protein Charge Prediction.
Orr AA, Tao A, Guvench O, MacKerell AD. 2023. Site Identification by Ligand Competitive Saturation-Biologics Approach for Structure-Based Protein Charge Prediction. Molecular pharmaceutics : . DOI: 10.1021/acs.molpharmaceut.3c00064
Mutation bias and the predictability of evolution.
Cano AV, Gitschlag BL, Rozhoňová H, Stoltzfus A, McCandlish DM, Payne JL. 2023. Mutation bias and the predictability of evolution. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 378(1877): 20220055. DOI: 10.1098/rstb.2022.0055
Monomeric crystal structure of the vaccine carrier protein CRM197 and implications for vaccine development.
Gallagher DT, Oganesyan N, Lees A. 2023. Monomeric crystal structure of the vaccine carrier protein CRM197 and implications for vaccine development. Acta crystallographica. Section F, Structural biology communications : . DOI: 10.1107/S2053230X23002364
Delivery of CRISPR-Cas12a Ribonucleoprotein Complex for Genome Editing in an Embryogenic Citrus Cell Line.
Fang H, Culver JN, Niedz RP, Qi Y. 2023. Delivery of CRISPR-Cas12a Ribonucleoprotein Complex for Genome Editing in an Embryogenic Citrus Cell Line. Methods in molecular biology (Clifton, N.J.) 2653: 153-171. DOI: 10.1007/978-1-0716-3131-7_10
Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.
Hladish TJ, Pillai AN, Pearson CAB, Toh KB, Tamayo A, Stoltzfus A, Longini IM. 2023. Evaluating targeted COVID-19 vaccination strategies with agent-based modeling. medRxiv : the preprint server for health sciences : . DOI: 10.1101/2023.03.09.23285319
Editorial: Improving crop health: Understanding the interaction mechanisms between crops and their pathogens.
Yang Y, Zhang Q, Yu Y, Li G, Xiao S, Ma Z. 2023. Editorial: Improving crop health: Understanding the interaction mechanisms between crops and their pathogens. Frontiers in plant science 14: 1161154. DOI: 10.3389/fpls.2023.1161154
Wheat Pore-forming toxin-like protein confers broad-spectrum resistance to fungal pathogens in Arabidopsis.
Singh L, Sinha A, Gupta M, Xiao S, Hammond R, Rawat N. 2023. Wheat Pore-forming toxin-like protein confers broad-spectrum resistance to fungal pathogens in Arabidopsis. Molecular plant-microbe interactions : MPMI : . DOI: 10.1094/MPMI-12-22-0247-R
Cell-Like Capsules with "Smart" Compartments.
Ahn SH, Borden LK, Bentley WE, Raghavan SR. 2023. Cell-Like Capsules with "Smart" Compartments. Small (Weinheim an der Bergstrasse, Germany) : e2206693. DOI: 10.1002/smll.202206693
Backbone NMR assignment of the yeast expressed Fab fragment of the NISTmAb reference antibody.
Solomon TL, Chao K, Gingras G, Aubin Y, O'Dell WB, Marino JP, Brinson RG. 2023. Backbone NMR assignment of the yeast expressed Fab fragment of the NISTmAb reference antibody. Biomolecular NMR assignments : . DOI: 10.1007/s12104-023-10123-9
Targeted Degradation of Androgen Receptor by VNPP433-3β in Castration-Resistant Prostate Cancer Cells Implicates Interaction with E3 Ligase MDM2 Resulting in Ubiquitin-Proteasomal Degradation.
Thomas E, Thankan RS, Purushottamachar P, Weber DJ, Njar VCO. 2023. Targeted Degradation of Androgen Receptor by VNPP433-3β in Castration-Resistant Prostate Cancer Cells Implicates Interaction with E3 Ligase MDM2 Resulting in Ubiquitin-Proteasomal Degradation. Cancers 15(4): . DOI: 10.3390/cancers15041198
Structural insights into protection against a SARS-CoV-2 spike variant by T cell receptor (TCR) diversity.
Wu D, Efimov GA, Bogolyubova AV, Pierce BG, Mariuzza RA. 2023. Structural insights into protection against a SARS-CoV-2 spike variant by T cell receptor (TCR) diversity. The Journal of biological chemistry : 103035. DOI: 10.1016/j.jbc.2023.103035
Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum α-Glucosidase I with Anti-SARS-CoV-2 Activity.
Karade SS, Franco EJ, Rojas AC, Hanrahan KC, Kolesnikov A, Yu W, MacKerell AD, Hill DC, Weber DJ, Brown AN, et al. 2023. Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum α-Glucosidase I with Anti-SARS-CoV-2 Activity. Journal of medicinal chemistry : . DOI: 10.1021/acs.jmedchem.2c01750
Integrated miRNA-mRNA analysis reveals candidate miRNA family regulating arbuscular mycorrhizal symbiosis of Poncirus trifoliata.
Ji C, Song F, He C, An J, Huang S, Yu H, Lu H, Xiao S, Bucher M, Pan Z. 2023. Integrated miRNA-mRNA analysis reveals candidate miRNA family regulating arbuscular mycorrhizal symbiosis of Poncirus trifoliata. Plant, cell & environment : . DOI: 10.1111/pce.14564
Bacteriophage endolysin powders for inhaled delivery against pulmonary infections.
Wang Y, Khanal D, Alreja AB, Yang H, Yk Chang R, Tai W, Li M, Nelson DC, Britton WJ, Chan HK. 2023. Bacteriophage endolysin powders for inhaled delivery against pulmonary infections. International journal of pharmaceutics : 122679. DOI: 10.1016/j.ijpharm.2023.122679