Publications

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Reproducing crystal binding modes of ligand functional groups using Site-Identification by Ligand Competitive Saturation (SILCS) simulations.
Raman EP, Yu W, Guvench O, Mackerell AD. 2011. Reproducing crystal binding modes of ligand functional groups using Site-Identification by Ligand Competitive Saturation (SILCS) simulations. Journal of chemical information and modeling 51(4): 877-96. DOI: 10.1021/ci100462t
Mutations of highly conserved bases in the peptidyltransferase center induce compensatory rearrangements in yeast ribosomes.
Rakauskaite R, Dinman JD. 2011. Mutations of highly conserved bases in the peptidyltransferase center induce compensatory rearrangements in yeast ribosomes. RNA (New York, N.Y.) 17(5): 855-64. DOI: 10.1261/rna.2593211
Development of chondroitin sulfate encapsulated PLGA microsphere delivery systems with controllable multiple burst releases for treating osteoarthritis.
Jiang T, Petersen RR, Call G, Ofek G, Gao J, Yao JQ. 2011. Development of chondroitin sulfate encapsulated PLGA microsphere delivery systems with controllable multiple burst releases for treating osteoarthritis. Journal of biomedical materials research. Part B, Applied biomaterials 97(2): 355-63. DOI: 10.1002/jbm.b.31822
Novel, potent anti-androgens of therapeutic potential: recent advances and promising developments.
Vasaitis TS, Njar VC. 2010. Novel, potent anti-androgens of therapeutic potential: recent advances and promising developments. Future medicinal chemistry 2(4): 667-80. DOI: 10.4155/fmc.10.14
Structure of the human activating natural cytotoxicity receptor NKp30 bound to its tumor cell ligand B7-H6.
Li Y, Wang Q, Mariuzza RA. 2011. Structure of the human activating natural cytotoxicity receptor NKp30 bound to its tumor cell ligand B7-H6. The Journal of experimental medicine 208(4): 703-14. DOI: 10.1084/jem.20102548
Conversion of 7-ketocholesterol to oxysterol metabolites by recombinant CYP27A1 and retinal pigment epithelial cells.
Heo GY, Bederman I, Mast N, Liao WL, Turko IV, Pikuleva IA. 2011. Conversion of 7-ketocholesterol to oxysterol metabolites by recombinant CYP27A1 and retinal pigment epithelial cells. Journal of lipid research 52(6): 1117-1127. DOI: 10.1194/jlr.M014217
Ribosome binding to a 5' translational enhancer is altered in the presence of the 3' untranslated region in cap-independent translation of turnip crinkle virus.
Stupina VA, Yuan X, Meskauskas A, Dinman JD, Simon AE. 2011. Ribosome binding to a 5' translational enhancer is altered in the presence of the 3' untranslated region in cap-independent translation of turnip crinkle virus. Journal of virology 85(10): 4638-53. DOI: 10.1128/JVI.00005-11
Gold cluster formation with phosphine ligands: etching as a size-selective synthetic pathway for small clusters?
Pettibone JM, Hudgens JW. 2011. Gold cluster formation with phosphine ligands: etching as a size-selective synthetic pathway for small clusters? ACS nano 5(4): 2989-3002. DOI: 10.1021/nn200053b
Biofabrication with biopolymers and enzymes: potential for constructing scaffolds from soft matter.
Wu LQ, Bentley WE, Payne GF. 2011. Biofabrication with biopolymers and enzymes: potential for constructing scaffolds from soft matter. The International journal of artificial organs 34(2): 215-24.
The cancer/testis antigen prostate-associated gene 4 (PAGE4) is a highly intrinsically disordered protein.
Zeng Y, He Y, Yang F, Mooney SM, Getzenberg RH, Orban J, Kulkarni P. 2011. The cancer/testis antigen prostate-associated gene 4 (PAGE4) is a highly intrinsically disordered protein. The Journal of biological chemistry 286(16): 13985-94. DOI: 10.1074/jbc.M110.210765
Stable isotope-labeling of DNA repair proteins, and their purification and characterization.
Reddy PT, Jaruga P, Nelson BC, Lowenthal M, Dizdaroglu M. 2011. Stable isotope-labeling of DNA repair proteins, and their purification and characterization. Protein expression and purification 78(1): 94-101. DOI: 10.1016/j.pep.2011.02.011
Redox-cycling and H2O2 generation by fabricated catecholic films in the absence of enzymes.
Kim E, Liu Y, Baker CJ, Owens R, Xiao S, Bentley WE, Payne GF. 2011. Redox-cycling and H2O2 generation by fabricated catecholic films in the absence of enzymes. Biomacromolecules 12(4): 880-8. DOI: 10.1021/bm101499a
The Effect of Column and Eluent Fluorination on the Retention and Separation of non-Fluorinated Amino Acids and Proteins by HPLC.
Joyner K, Wang W, Yu YB. 2011. The Effect of Column and Eluent Fluorination on the Retention and Separation of non-Fluorinated Amino Acids and Proteins by HPLC. Journal of fluorine chemistry 132(2): 114-122.
Challenges in protein folding simulations: Timescale, representation, and analysis.
Freddolino PL, Harrison CB, Liu Y, Schulten K. 2010. Challenges in protein folding simulations: Timescale, representation, and analysis. Nature physics 6(10): 751-758.
Structure of a TCR with high affinity for self-antigen reveals basis for escape from negative selection.
Yin Y, Li Y, Kerzic MC, Martin R, Mariuzza RA. 2011. Structure of a TCR with high affinity for self-antigen reveals basis for escape from negative selection. The EMBO journal 30(6): 1137-48. DOI: 10.1038/emboj.2011.21