Publications

The internal workings of a DNA polymerase clamp-loading machine.
Turner J, Hingorani MM, Kelman Z, O'Donnell M, Turner J, Hingorani MM, Kelman Z, O'Donnell M. 1999. The internal workings of a DNA polymerase clamp-loading machine. The EMBO journal 18(3): 771-83.
Determinants of side chain conformational preferences in protein structures.
Samudrala R, Moult J, Samudrala R, Moult J. 1998. Determinants of side chain conformational preferences in protein structures. Protein engineering 11(11): 991-7.
Location of the phosphate binding site within Clostridium symbiosum pyruvate phosphate dikinase.
McGuire M, Huang K, Kapadia G, Herzberg O, Dunaway-Mariano D, McGuire M, Huang K, Kapadia G, Herzberg O, Dunaway-Mariano D. 1998. Location of the phosphate binding site within Clostridium symbiosum pyruvate phosphate dikinase. Biochemistry 37(39): 13463-74.
Coat protein interactions involved in tobacco mosaic tobamovirus cross-protection.
Lu B, Stubbs G, Culver JN, Lu B, Stubbs G, Culver JN. 1998. Coat protein interactions involved in tobacco mosaic tobamovirus cross-protection. Virology 248(2): 188-98.
Molecular evolution: recent cases of spliceosomal intron gain?
Logsdon JM, Stoltzfus A, Doolittle WF, Logsdon JM, Stoltzfus A, Doolittle WF. 2022. Molecular evolution: recent cases of spliceosomal intron gain? Current biology : CB 8(16): R560-3.
Topography of the interaction of HPr(Ser) kinase with HPr.
Zhu PP, Herzberg O, Peterkofsky A, Zhu PP, Herzberg O, Peterkofsky A. 1998. Topography of the interaction of HPr(Ser) kinase with HPr. Biochemistry 37(34): 11762-70.
A promiscuous binding surface: crystal structure of the IIA domain of the glucose-specific permease from Mycoplasma capricolum.
Huang K, Kapadia G, Zhu PP, Peterkofsky A, Herzberg O, Huang K, Kapadia G, Zhu PP, Peterkofsky A, Herzberg O. 1998. A promiscuous binding surface: crystal structure of the IIA domain of the glucose-specific permease from Mycoplasma capricolum. Structure (London, England : 1993) 6(6): 697-710.
Protein-PCNA interactions: a DNA-scanning mechanism?
Kelman Z, Hurwitz J, Kelman Z, Hurwitz J. 1998. Protein-PCNA interactions: a DNA-scanning mechanism? Trends in biochemical sciences 23(7): 236-8.
Preparation of hydrogel microspheres by coacervation of aqueous polyphosphazene solutions.
Andrianov AK, Chen J, Payne LG, Andrianov AK, Chen J, Payne LG. 2022. Preparation of hydrogel microspheres by coacervation of aqueous polyphosphazene solutions. Biomaterials 19(1-3): 109-15.
A graph-theoretic algorithm for comparative modeling of protein structure.
Samudrala R, Moult J, Samudrala R, Moult J. 1998. A graph-theoretic algorithm for comparative modeling of protein structure. Journal of molecular biology 279(1): 287-302.
A photoaffinity probe covalently modifies the catalytic site of the cGMP-binding cGMP-specific phosphodiesterase (PDE-5).
Corbin JD, Beasley A, Turko IV, Haik TL, Mangum KA, Wells JN, Francis SH, Sekhar KR, Corbin JD, Beasley A, Turko IV, Haik TL, Mangum KA, Wells JN, Francis SH, Sekhar KR. 1998. A photoaffinity probe covalently modifies the catalytic site of the cGMP-binding cGMP-specific phosphodiesterase (PDE-5). Cell biochemistry and biophysics 29(1-2): 145-57.
Poly[di(carboxylatophenoxy)phosphazene] (PCPP) is a potent immunoadjuvant for an influenza vaccine.
Payne LG, Jenkins SA, Woods AL, Grund EM, Geribo WE, Loebelenz JR, Andrianov AK, Roberts BE, Payne LG, Jenkins SA, Woods AL, Grund EM, Geribo WE, Loebelenz JR, Andrianov AK, Roberts BE. 1998. Poly[di(carboxylatophenoxy)phosphazene] (PCPP) is a potent immunoadjuvant for an influenza vaccine. Vaccine 16(1): 92-8.
Devoted to the lagging strand-the subunit of DNA polymerase III holoenzyme contacts SSB to promote processive elongation and sliding clamp assembly.
Kelman Z, Yuzhakov A, Andjelkovic J, O'Donnell M, Kelman Z, Yuzhakov A, Andjelkovic J, O'Donnell M. 1998. Devoted to the lagging strand-the subunit of DNA polymerase III holoenzyme contacts SSB to promote processive elongation and sliding clamp assembly. The EMBO journal 17(8): 2436-49.
Intersubunit interactions allowing a carboxylate mutant coat protein to inhibit tobamovirus disassembly.
Lu B, Taraporewala F, Stubbs G, Culver JN, Lu B, Taraporewala F, Stubbs G, Culver JN. 1998. Intersubunit interactions allowing a carboxylate mutant coat protein to inhibit tobamovirus disassembly. Virology 244(1): 13-9.
Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase.
Banerjee S, Pieper U, Kapadia G, Pannell LK, Herzberg O, Banerjee S, Pieper U, Kapadia G, Pannell LK, Herzberg O. 1998. Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase. Biochemistry 37(10): 3286-96.
Processivity of DNA polymerases: two mechanisms, one goal.
Kelman Z, Hurwitz J, O'Donnell M, Kelman Z, Hurwitz J, O'Donnell M. 1998. Processivity of DNA polymerases: two mechanisms, one goal. Structure (London, England : 1993) 6(2): 121-5.
Conformation of the sebacyl beta1Lys82-beta2Lys82 crosslink in T-state human hemoglobin.
Ji X, Braxenthaler M, Moult J, Fronticelli C, Bucci E, Gilliland GL, Ji X, Braxenthaler M, Moult J, Fronticelli C, Bucci E, Gilliland GL. 1998. Conformation of the sebacyl beta1Lys82-beta2Lys82 crosslink in T-state human hemoglobin. Proteins 30(3): 309-20.
Hybrid bilayer membranes in air and water: infrared spectroscopy and neutron reflectivity studies.
Meuse CW, Krueger S, Majkrzak CF, Dura JA, Fu J, Connor JT, Plant AL, Meuse CW, Krueger S, Majkrzak CF, Dura JA, Fu J, Connor JT, Plant AL. 1998. Hybrid bilayer membranes in air and water: infrared spectroscopy and neutron reflectivity studies. Biophysical journal 74(3): 1388-98.
An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction.
Samudrala R, Moult J, Samudrala R, Moult J. 1998. An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction. Journal of molecular biology 275(5): 895-916.
Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii.
Pieper U, Kapadia G, Mevarech M, Herzberg O, Pieper U, Kapadia G, Mevarech M, Herzberg O. 1998. Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii. Structure (London, England : 1993) 6(1): 75-88.