Publications

Devoted to the lagging strand-the subunit of DNA polymerase III holoenzyme contacts SSB to promote processive elongation and sliding clamp assembly.
Kelman Z, Yuzhakov A, Andjelkovic J, O'Donnell M, Kelman Z, Yuzhakov A, Andjelkovic J, O'Donnell M. 1998. Devoted to the lagging strand-the subunit of DNA polymerase III holoenzyme contacts SSB to promote processive elongation and sliding clamp assembly. The EMBO journal 17(8): 2436-49.
Intersubunit interactions allowing a carboxylate mutant coat protein to inhibit tobamovirus disassembly.
Lu B, Taraporewala F, Stubbs G, Culver JN, Lu B, Taraporewala F, Stubbs G, Culver JN. 1998. Intersubunit interactions allowing a carboxylate mutant coat protein to inhibit tobamovirus disassembly. Virology 244(1): 13-9.
Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase.
Banerjee S, Pieper U, Kapadia G, Pannell LK, Herzberg O, Banerjee S, Pieper U, Kapadia G, Pannell LK, Herzberg O. 1998. Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase. Biochemistry 37(10): 3286-96.
Processivity of DNA polymerases: two mechanisms, one goal.
Kelman Z, Hurwitz J, O'Donnell M, Kelman Z, Hurwitz J, O'Donnell M. 1998. Processivity of DNA polymerases: two mechanisms, one goal. Structure (London, England : 1993) 6(2): 121-5.
Conformation of the sebacyl beta1Lys82-beta2Lys82 crosslink in T-state human hemoglobin.
Ji X, Braxenthaler M, Moult J, Fronticelli C, Bucci E, Gilliland GL, Ji X, Braxenthaler M, Moult J, Fronticelli C, Bucci E, Gilliland GL. 1998. Conformation of the sebacyl beta1Lys82-beta2Lys82 crosslink in T-state human hemoglobin. Proteins 30(3): 309-20.
Hybrid bilayer membranes in air and water: infrared spectroscopy and neutron reflectivity studies.
Meuse CW, Krueger S, Majkrzak CF, Dura JA, Fu J, Connor JT, Plant AL, Meuse CW, Krueger S, Majkrzak CF, Dura JA, Fu J, Connor JT, Plant AL. 1998. Hybrid bilayer membranes in air and water: infrared spectroscopy and neutron reflectivity studies. Biophysical journal 74(3): 1388-98.
An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction.
Samudrala R, Moult J, Samudrala R, Moult J. 1998. An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction. Journal of molecular biology 275(5): 895-916.
Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii.
Pieper U, Kapadia G, Mevarech M, Herzberg O, Pieper U, Kapadia G, Mevarech M, Herzberg O. 1998. Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii. Structure (London, England : 1993) 6(1): 75-88.
Crystal structures of the cadmium- and mercury-substituted metallo-beta-lactamase from Bacteroides fragilis.
Concha NO, Rasmussen BA, Bush K, Herzberg O, Concha NO, Rasmussen BA, Bush K, Herzberg O. 1997. Crystal structures of the cadmium- and mercury-substituted metallo-beta-lactamase from Bacteroides fragilis. Protein science : a publication of the Protein Society 6(12): 2671-6.
In vitro infection and replication of hepatitis E virus in primary cynomolgus macaque hepatocytes.
Tam AW, White R, Yarbough PO, Murphy BJ, McAtee CP, Lanford RE, Fuerst TR, Tam AW, White R, Yarbough PO, Murphy BJ, McAtee CP, Lanford RE, Fuerst TR. 1997. In vitro infection and replication of hepatitis E virus in primary cynomolgus macaque hepatocytes. Virology 238(1): 94-102.
Chaos in protein dynamics.
Braxenthaler M, Unger R, Auerbach D, Given JA, Moult J, Braxenthaler M, Unger R, Auerbach D, Given JA, Moult J. 1997. Chaos in protein dynamics. Proteins 29(4): 417-25.
DNA polymerase delta isolated from Schizosaccharomyces pombe contains five subunits.
Zuo S, Gibbs E, Kelman Z, Wang TS, O'Donnell M, MacNeill SA, Hurwitz J, Zuo S, Gibbs E, Kelman Z, Wang TS, O'Donnell M, MacNeill SA, Hurwitz J. 1997. DNA polymerase delta isolated from Schizosaccharomyces pombe contains five subunits. Proceedings of the National Academy of Sciences of the United States of America 94(21): 11244-9.
Intron "sliding" and the diversity of intron positions.
Stoltzfus A, Logsdon JM, Palmer JD, Doolittle WF, Stoltzfus A, Logsdon JM, Palmer JD, Doolittle WF. 1997. Intron "sliding" and the diversity of intron positions. Proceedings of the National Academy of Sciences of the United States of America 94(20): 10739-44.
Probing the non-proline cis peptide bond in beta-lactamase from Staphylococcus aureus PC1 by the replacement Asn136 --> Ala.
Banerjee S, Shigematsu N, Pannell LK, Ruvinov S, Orban J, Schwarz F, Herzberg O, Banerjee S, Shigematsu N, Pannell LK, Ruvinov S, Orban J, Schwarz F, Herzberg O. 1997. Probing the non-proline cis peptide bond in beta-lactamase from Staphylococcus aureus PC1 by the replacement Asn136 --> Ala. Biochemistry 36(36): 10857-66.
Circularly permuted beta-lactamase from Staphylococcus aureus PC1.
Pieper U, Hayakawa K, Li Z, Herzberg O, Pieper U, Hayakawa K, Li Z, Herzberg O. 1997. Circularly permuted beta-lactamase from Staphylococcus aureus PC1. Biochemistry 36(29): 8767-74.
Structure of ribgrass mosaic virus at 2.9 A resolution: evolution and taxonomy of tobamoviruses.
Wang H, Culver JN, Stubbs G, Wang H, Culver JN, Stubbs G. 1997. Structure of ribgrass mosaic virus at 2.9 A resolution: evolution and taxonomy of tobamoviruses. Journal of molecular biology 269(5): 769-79.
Protein folding simulations with genetic algorithms and a detailed molecular description.
Pedersen JT, Moult J, Pedersen JT, Moult J. 1997. Protein folding simulations with genetic algorithms and a detailed molecular description. Journal of molecular biology 269(2): 240-59.
Comparison of database potentials and molecular mechanics force fields.
Moult J, Moult J. 1997. Comparison of database potentials and molecular mechanics force fields. Current opinion in structural biology 7(2): 194-9.
PCNA: structure, functions and interactions.
Kelman Z, Kelman Z. 1997. PCNA: structure, functions and interactions. Oncogene 14(6): 629-40.
Plant cell biodegradation of a xenobiotic nitrate ester, nitroglycerin.
Goel A, Kumar G, Payne GF, Dube SK, Goel A, Kumar G, Payne GF, Dube SK. 1997. Plant cell biodegradation of a xenobiotic nitrate ester, nitroglycerin. Nature biotechnology 15(2): 174-7.