Publications

The C-terminal region of Schizosaccaromyces pombe proliferating cell nuclear antigen is essential for DNA polymerase activity.
Kelman Z, Zuo S, Arroyo MP, Wang TS, Hurwitz J, Kelman Z, Zuo S, Arroyo MP, Wang TS, Hurwitz J. 1999. The C-terminal region of Schizosaccaromyces pombe proliferating cell nuclear antigen is essential for DNA polymerase activity. Proceedings of the National Academy of Sciences of the United States of America 96(17): 9515-20.
On the possibility of constructive neutral evolution.
Stoltzfus A, Stoltzfus A. 1999. On the possibility of constructive neutral evolution. Journal of molecular evolution 49(2): 169-81.
Relocation of the catalytic carboxylate group in class A beta-lactamase: the structure and function of the mutant enzyme Glu166-->Gln:Asn170-->Asp.
Chen CC, Herzberg O, Chen CC, Herzberg O. 1999. Relocation of the catalytic carboxylate group in class A beta-lactamase: the structure and function of the mutant enzyme Glu166-->Gln:Asn170-->Asp. Protein engineering 12(7): 573-9.
Inhibition of cyclic GMP-binding cyclic GMP-specific phosphodiesterase (Type 5) by sildenafil and related compounds.
Turko IV, Ballard SA, Francis SH, Corbin JD, Turko IV, Ballard SA, Francis SH, Corbin JD. 1999. Inhibition of cyclic GMP-binding cyclic GMP-specific phosphodiesterase (Type 5) by sildenafil and related compounds. Molecular pharmacology 56(1): 124-30.
Helix swapping between two alpha/beta barrels: crystal structure of phosphoenolpyruvate mutase with bound Mg(2+)-oxalate.
Huang K, Li Z, Jia Y, Dunaway-Mariano D, Herzberg O, Huang K, Li Z, Jia Y, Dunaway-Mariano D, Herzberg O. 1999. Helix swapping between two alpha/beta barrels: crystal structure of phosphoenolpyruvate mutase with bound Mg(2+)-oxalate. Structure (London, England : 1993) 7(5): 539-48.
The structural basis of T cell activation by superantigens.
Li H, Llera A, Malchiodi EL, Mariuzza RA, Li H, Llera A, Malchiodi EL, Mariuzza RA. 1999. The structural basis of T cell activation by superantigens. Annual review of immunology 17: 435-66.
Role of the T cell receptor alpha chain in stabilizing TCR-superantigen-MHC class II complexes.
Andersen PS, Lavoie PM, Sékaly RP, Churchill H, Kranz DM, Schlievert PM, Karjalainen K, Mariuzza RA, Andersen PS, Lavoie PM, Sékaly RP, Churchill H, Kranz DM, Schlievert PM, Karjalainen K, Mariuzza RA. 1999. Role of the T cell receptor alpha chain in stabilizing TCR-superantigen-MHC class II complexes. Immunity 10(4): 473-83.
Protein backbone angle restraints from searching a database for chemical shift and sequence homology.
Cornilescu G, Delaglio F, Bax A, Cornilescu G, Delaglio F, Bax A. 1999. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. Journal of biomolecular NMR 13(3): 289-302.
Structural consequences of the active site substitution Cys181 ==> Ser in metallo-beta-lactamase from Bacteroides fragilis.
Li Z, Rasmussen BA, Herzberg O, Li Z, Rasmussen BA, Herzberg O. 1999. Structural consequences of the active site substitution Cys181 ==> Ser in metallo-beta-lactamase from Bacteroides fragilis. Protein science : a publication of the Protein Society 8(1): 249-52.
Hydrogen bonding and equilibrium protium-deuterium fractionation factors in the immunoglobulin G binding domain of protein G.
Khare D, Alexander P, Orban J, Khare D, Alexander P, Orban J. 1999. Hydrogen bonding and equilibrium protium-deuterium fractionation factors in the immunoglobulin G binding domain of protein G. Biochemistry 38(13): 3918-25.
Enzymatic grafting of a natural product onto chitosan to confer water solubility under basic conditions
Kumar G, Smith PJ, Payne GF, Kumar G, Smith PJ, Payne GF. 1999. Enzymatic grafting of a natural product onto chitosan to confer water solubility under basic conditions Biotechnology and bioengineering 63(2): 154-65.
Studies on the interactions between human replication factor C and human proliferating cell nuclear antigen.
Zhang G, Gibbs E, Kelman Z, O'Donnell M, Hurwitz J, Zhang G, Gibbs E, Kelman Z, O'Donnell M, Hurwitz J. 1999. Studies on the interactions between human replication factor C and human proliferating cell nuclear antigen. Proceedings of the National Academy of Sciences of the United States of America 96(5): 1869-74.
Biophysical characterization of a designed TMV coat protein mutant, R46G, that elicits a moderate hypersensitivity response in Nicotiana sylvestris.
Toedt JM, Braswell EH, Schuster TM, Yphantis DA, Taraporewala ZF, Culver JN, Toedt JM, Braswell EH, Schuster TM, Yphantis DA, Taraporewala ZF, Culver JN. 1999. Biophysical characterization of a designed TMV coat protein mutant, R46G, that elicits a moderate hypersensitivity response in Nicotiana sylvestris. Protein science : a publication of the Protein Society 8(2): 261-70.
Trading places on DNA--a three-point switch underlies primer handoff from primase to the replicative DNA polymerase.
Yuzhakov A, Kelman Z, O'Donnell M, Yuzhakov A, Kelman Z, O'Donnell M. 1999. Trading places on DNA--a three-point switch underlies primer handoff from primase to the replicative DNA polymerase. Cell 96(1): 153-63.
The internal workings of a DNA polymerase clamp-loading machine.
Turner J, Hingorani MM, Kelman Z, O'Donnell M, Turner J, Hingorani MM, Kelman Z, O'Donnell M. 1999. The internal workings of a DNA polymerase clamp-loading machine. The EMBO journal 18(3): 771-83.
Determinants of side chain conformational preferences in protein structures.
Samudrala R, Moult J, Samudrala R, Moult J. 1998. Determinants of side chain conformational preferences in protein structures. Protein engineering 11(11): 991-7.
Location of the phosphate binding site within Clostridium symbiosum pyruvate phosphate dikinase.
McGuire M, Huang K, Kapadia G, Herzberg O, Dunaway-Mariano D, McGuire M, Huang K, Kapadia G, Herzberg O, Dunaway-Mariano D. 1998. Location of the phosphate binding site within Clostridium symbiosum pyruvate phosphate dikinase. Biochemistry 37(39): 13463-74.
Coat protein interactions involved in tobacco mosaic tobamovirus cross-protection.
Lu B, Stubbs G, Culver JN, Lu B, Stubbs G, Culver JN. 1998. Coat protein interactions involved in tobacco mosaic tobamovirus cross-protection. Virology 248(2): 188-98.
Molecular evolution: recent cases of spliceosomal intron gain?
Logsdon JM, Stoltzfus A, Doolittle WF, Logsdon JM, Stoltzfus A, Doolittle WF. 2022. Molecular evolution: recent cases of spliceosomal intron gain? Current biology : CB 8(16): R560-3.
Topography of the interaction of HPr(Ser) kinase with HPr.
Zhu PP, Herzberg O, Peterkofsky A, Zhu PP, Herzberg O, Peterkofsky A. 1998. Topography of the interaction of HPr(Ser) kinase with HPr. Biochemistry 37(34): 11762-70.