Publications

Delivered dose: a drug-centric phenotype for chemotherapy dose individualization.
Yu YB. 2009. Delivered dose: a drug-centric phenotype for chemotherapy dose individualization. Pharmaceutical research 26(8): 1803-6. DOI: 10.1007/s11095-009-9913-3
Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site.
Dey B, Svehla K, Xu L, Wycuff D, Zhou T, Voss G, Phogat A, Chakrabarti BK, Li Y, Shaw G, et al. 2009. Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site. PLoS pathogens 5(5): e1000445. DOI: 10.1371/journal.ppat.1000445
A biochemically active MCM-like helicase in Bacillus cereus.
Samuels M, Gulati G, Shin JH, Opara R, McSweeney E, Sekedat M, Long S, Kelman Z, Jeruzalmi D. 2009. A biochemically active MCM-like helicase in Bacillus cereus. Nucleic acids research 37(13): 4441-52. DOI: 10.1093/nar/gkp376
Symmetry-guided design and fluorous synthesis of a stable and rapidly excreted imaging tracer for (19)F MRI.
Jiang ZX, Liu X, Jeong EK, Yu YB. 2009. Symmetry-guided design and fluorous synthesis of a stable and rapidly excreted imaging tracer for (19)F MRI. Angewandte Chemie (International ed. in English) 48(26): 4755-8. DOI: 10.1002/anie.200901005
Noncompetitive peak decay analysis of drug-protein dissociation by high-performance affinity chromatography.
Chen J, Schiel JE, Hage DS. 2009. Noncompetitive peak decay analysis of drug-protein dissociation by high-performance affinity chromatography. Journal of separation science 32(10): 1632-41. DOI: 10.1002/jssc.200900074
Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography.
Charpentier TH, Wilder PT, Liriano MA, Varney KM, Zhong S, Coop A, Pozharski E, MacKerell AD, Toth EA, Weber DJ. 2009. Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography. Biochemistry 48(26): 6202-12. DOI: 10.1021/bi9005754
Dissecting structural transitions in the HIV-1 dimerization initiation site RNA using 2-aminopurine fluorescence.
Lee HW, Briggs KT, Marino JP. 2009. Dissecting structural transitions in the HIV-1 dimerization initiation site RNA using 2-aminopurine fluorescence. Methods (San Diego, Calif.) 49(2): 118-27. DOI: 10.1016/j.ymeth.2009.05.006
Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008.
Michino M, Abola E, , Brooks CL, Dixon JS, Moult J, Stevens RC. 2009. Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008. Nature reviews. Drug discovery 8(6): 455-63. DOI: 10.1038/nrd2877
Accumulation of large protein fragments in prematurely senescent ARPE-19 cells.
Liao WL, Turko IV. 2009. Accumulation of large protein fragments in prematurely senescent ARPE-19 cells. Investigative ophthalmology & visual science 50(10): 4992-7. DOI: 10.1167/iovs.09-3671
Probing anomalous structural features in polypurine tract-containing RNA-DNA hybrids with neomycin B.
Brinson RG, Turner KB, Yi-Brunozzi HY, Le Grice SF, Fabris D, Marino JP. 2009. Probing anomalous structural features in polypurine tract-containing RNA-DNA hybrids with neomycin B. Biochemistry 48(29): 6988-97. DOI: 10.1021/bi900357j
Solution structure of S100A1 bound to the CapZ peptide (TRTK12).
Wright NT, Cannon BR, Wilder PT, Morgan MT, Varney KM, Zimmer DB, Weber DJ. 2009. Solution structure of S100A1 bound to the CapZ peptide (TRTK12). Journal of molecular biology 386(5): 1265-77.
Mechanical characterization of differentiated human embryonic stem cells.
Ofek G, Willard VP, Koay EJ, Hu JC, Lin P, Athanasiou KA. 2009. Mechanical characterization of differentiated human embryonic stem cells. Journal of biomechanical engineering 131(6): 061011. DOI: 10.1115/1.3127262
Measurement of drug-protein dissociation rates by high-performance affinity chromatography and peak profiling.
Schiel JE, Ohnmacht CM, Hage DS. 2009. Measurement of drug-protein dissociation rates by high-performance affinity chromatography and peak profiling. Analytical chemistry 81(11): 4320-33. DOI: 10.1021/ac9000404
Unwinding the structure and function of the archaeal MCM helicase.
Sakakibara N, Kelman LM, Kelman Z. 2009. Unwinding the structure and function of the archaeal MCM helicase. Molecular microbiology 72(2): 286-96.
Crystallization and crystallographic analysis of Bacillus subtilis xylanase C.
St John FJ, Godwin DK, Preston JF, Pozharski E, Hurlbert JC. 2009. Crystallization and crystallographic analysis of Bacillus subtilis xylanase C. Acta crystallographica. Section F, Structural biology and crystallization communications 65(Pt 5): 499-503. DOI: 10.1107/S1744309109013098