Publications

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In situ mechanical properties of the chondrocyte cytoplasm and nucleus.
Ofek G, Natoli RM, Athanasiou KA. 2009. In situ mechanical properties of the chondrocyte cytoplasm and nucleus. Journal of biomechanics 42(7): 873-7. DOI: 10.1016/j.jbiomech.2009.01.024
Advances in solution- and solid-phase synthesis toward the generation of natural product-like libraries.
Nandy JP, Prakesch M, Khadem S, Reddy PT, Sharma U, Arya P. 2009. Advances in solution- and solid-phase synthesis toward the generation of natural product-like libraries. Chemical reviews 109(5): 1999-2060. DOI: 10.1021/cr800188v
ATP hydrolysis and DNA binding confer thermostability on the MCM helicase.
Sakakibara N, Schwarz FP, Kelman Z. 2009. ATP hydrolysis and DNA binding confer thermostability on the MCM helicase. Biochemistry 48(11): 2330-9. DOI: 10.1021/bi801921j
Extensive conformational searches of 13 representative dipeptides and an efficient method for dipeptide structure determinations based on amino acid conformers.
Yu W, Xu X, Li H, Pang R, Fang K, Lin Z. 2009. Extensive conformational searches of 13 representative dipeptides and an efficient method for dipeptide structure determinations based on amino acid conformers. Journal of computational chemistry 30(13): 2105-21. DOI: 10.1002/jcc.21211
Identification of active sites of biomolecules II: Saccharide and transition metal ion in aqueous solution.
Coskuner O, Bergeron DE, Rincon L, Hudgens JW, Gonzalez CA. 2009. Identification of active sites of biomolecules II: Saccharide and transition metal ion in aqueous solution. The journal of physical chemistry. A 113(11): 2491-9. DOI: 10.1021/jp805747f
Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase.
Galkin A, Li Z, Li L, Kulakova L, Pal LR, Dunaway-Mariano D, Herzberg O. 2009. Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase. Biochemistry 48(14): 3186-96. DOI: 10.1021/bi9001166
Biofabrication of antibodies and antigens via IgG-binding domain engineered with activatable pentatyrosine pro-tag.
Wu HC, Shi XW, Tsao CY, Lewandowski AT, Fernandes R, Hung CW, DeShong P, Kobatake E, Valdes JJ, Payne GF, et al. 2009. Biofabrication of antibodies and antigens via IgG-binding domain engineered with activatable pentatyrosine pro-tag. Biotechnology and bioengineering 103(2): 231-40. DOI: 10.1002/bit.22238
Structure of functional Staphylococcus aureus alpha-hemolysin channels in tethered bilayer lipid membranes.
McGillivray DJ, Valincius G, Heinrich F, Robertson JW, Vanderah DJ, Febo-Ayala W, Ignatjev I, Lösche M, Kasianowicz JJ. 2009. Structure of functional Staphylococcus aureus alpha-hemolysin channels in tethered bilayer lipid membranes. Biophysical journal 96(4): 1547-53. DOI: 10.1016/j.bpj.2008.11.020
Outcome of a workshop on applications of protein models in biomedical research.
Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, et al. 2009. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993) 17(2): 151-9. DOI: 10.1016/j.str.2008.12.014
Plasmid-encoded protein: the principal factor in the "metabolic burden" associated with recombinant bacteria. Biotechnology Bioengineering, 1990.
Bentley WE, Mirjalili N, Andersen DC, Davis RH, Kompala DS. 2009. Plasmid-encoded protein: the principal factor in the "metabolic burden" associated with recombinant bacteria. Biotechnology Bioengineering, 1990. Biotechnology and bioengineering 102(5): 1284-97; discussion 1283. DOI: 10.1002/bit.22292
Profound asymmetry in the structure of the cAMP-free cAMP Receptor Protein (CRP) from Mycobacterium tuberculosis.
Gallagher DT, Smith N, Kim SK, Robinson H, Reddy PT. 2009. Profound asymmetry in the structure of the cAMP-free cAMP Receptor Protein (CRP) from Mycobacterium tuberculosis. The Journal of biological chemistry 284(13): 8228-32. DOI: 10.1074/jbc.C800215200
Towards area-based in vitro metabolic engineering: assembly of Pfs enzyme onto patterned microfabricated chips.
Lewandowski AT, Bentley WE, Yi H, Rubloff GW, Payne GF, Ghodssi R. 2022. Towards area-based in vitro metabolic engineering: assembly of Pfs enzyme onto patterned microfabricated chips. Biotechnology progress 24(5): 1042-51. DOI: 10.1002/btpr.44
Combined use of mass spectrometry and heterologous expression for identification of membrane-interacting peptides in cytochrome P450 46A1 and NADPH-cytochrome P450 oxidoreductase.
Mast N, Liao WL, Pikuleva IA, Turko IV. 2009. Combined use of mass spectrometry and heterologous expression for identification of membrane-interacting peptides in cytochrome P450 46A1 and NADPH-cytochrome P450 oxidoreductase. Archives of biochemistry and biophysics 483(1): 81-9. DOI: 10.1016/j.abb.2009.01.002
Preparation of silica stabilized Tobacco mosaic virus templates for the production of metal and layered nanoparticles.
Royston ES, Brown AD, Harris MT, Culver JN. 2009. Preparation of silica stabilized Tobacco mosaic virus templates for the production of metal and layered nanoparticles. Journal of colloid and interface science 332(2): 402-7. DOI: 10.1016/j.jcis.2008.12.064
The Biomolecular Crystallization Database Version 4: expanded content and new features.
Tung M, Gallagher DT. 2009. The Biomolecular Crystallization Database Version 4: expanded content and new features. Acta crystallographica. Section D, Biological crystallography 65(Pt 1): 18-23. DOI: 10.1107/S0907444908035440