Publications

Do Archaea Need an Origin of Replication?
Kelman LM, Kelman Z, Kelman LM, Kelman Z. 2018. Do Archaea Need an Origin of Replication? Trends in microbiology 26(3): 172-174. DOI: 10.1016/j.tim.2017.12.001
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.
Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, et al. 2017. Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Genome medicine 9(1): 113. DOI: 10.1186/s13073-017-0509-y
XAP5 CIRCADIAN TIMEKEEPER Positively Regulates RESISTANCE TO POWDERY MILDEW8.1-Mediated Immunity in Arabidopsis.
Xu YJ, Lei Y, Li R, Zhang LL, Zhao ZX, Zhao JH, Fan J, Li Y, Yang H, Shang J, et al. 2017. <i>XAP5 CIRCADIAN TIMEKEEPER</i> Positively Regulates <i>RESISTANCE TO POWDERY MILDEW8.1</i>-Mediated Immunity in <i>Arabidopsis</i>. Frontiers in plant science 8: 2044. DOI: 10.3389/fpls.2017.02044
Electrical Programming of Soft Matter: Using Temporally Varying Electrical Inputs To Spatially Control Self Assembly.
Yan K, Liu Y, Zhang J, Correa SO, Shang W, Tsai CC, Bentley WE, Shen J, Scarcelli G, Raub CB, et al. 2018. Electrical Programming of Soft Matter: Using Temporally Varying Electrical Inputs To Spatially Control Self Assembly. Biomacromolecules 19(2): 364-373. DOI: 10.1021/acs.biomac.7b01464
Hybrid Applications of Solution Scattering to Aid Structural Biology.
Grishaev AV, Grishaev AV. 2017. Hybrid Applications of Solution Scattering to Aid Structural Biology. Advances in experimental medicine and biology 1009: 215-227. DOI: 10.1007/978-981-10-6038-0_13
Novel galeterone analogs act independently of AR and AR-V7 for the activation of the unfolded protein response and induction of apoptosis in the CWR22Rv1 prostate cancer cell model.
McCarty DJ, Huang W, Kane MA, Purushottamachar P, Gediya LK, Njar VCO, McCarty DJ, Huang W, Kane MA, Purushottamachar P, Gediya LK, Njar VCO. 2017. Novel galeterone analogs act independently of AR and AR-V7 for the activation of the unfolded protein response and induction of apoptosis in the CWR22Rv1 prostate cancer cell model. Oncotarget 8(51): 88501-88516. DOI: 10.18632/oncotarget.19762
Data on crystal organization in the structure of the Fab fragment from the NIST reference antibody, RM 8671.
Gallagher DT, Karageorgos I, Hudgens JW, Galvin CV, Gallagher DT, Karageorgos I, Hudgens JW, Galvin CV. 2018. Data on crystal organization in the structure of the Fab fragment from the NIST reference antibody, RM 8671. Data in brief 16: 29-36. DOI: 10.1016/j.dib.2017.11.013
Genome Replication in Thermococcus kodakarensis Independent of Cdc6 and an Origin of Replication.
Gehring AM, Astling DP, Matsumi R, Burkhart BW, Kelman Z, Reeve JN, Jones KL, Santangelo TJ, Gehring AM, Astling DP, Matsumi R, Burkhart BW, Kelman Z, Reeve JN, Jones KL, Santangelo TJ. 2017. Genome Replication in <i>Thermococcus kodakarensis</i> Independent of Cdc6 and an Origin of Replication. Frontiers in microbiology 8: 2084. DOI: 10.3389/fmicb.2017.02084
Evaluation of the template-based modeling in CASP12.
Kryshtafovych A, Monastyrskyy B, Fidelis K, Moult J, Schwede T, Tramontano A, Kryshtafovych A, Monastyrskyy B, Fidelis K, Moult J, Schwede T, Tramontano A. 2018. Evaluation of the template-based modeling in CASP12. Proteins 86 Suppl 1: 321-334. DOI: 10.1002/prot.25425
Complete Genome Sequence of Klebsiella pneumoniae Phages SopranoGao, MezzoGao, and AltoGao.
Gao S, Linden SB, Nelson DC, Gao S, Linden SB, Nelson DC. 2017. Complete Genome Sequence of <i>Klebsiella pneumoniae</i> Phages SopranoGao, MezzoGao, and AltoGao. Genome announcements 5(45): . DOI: 10.1128/genomeA.01009-17
Detect, correct, retract: How to manage incorrect structural models.
Wlodawer A, Dauter Z, Porebski PJ, Minor W, Stanfield R, Jaskolski M, Pozharski E, Weichenberger CX, Rupp B, Wlodawer A, Dauter Z, Porebski PJ, Minor W, Stanfield R, Jaskolski M, Pozharski E, Weichenberger CX, Rupp B. 2018. Detect, correct, retract: How to manage incorrect structural models. The FEBS journal 285(3): 444-466. DOI: 10.1111/febs.14320
Short-chained oligo(ethylene oxide)-functionalized gold nanoparticles: realization of significant protein resistance.
Riley KR, Sims CM, Wood IT, Vanderah DJ, Walker ML, Riley KR, Sims CM, Wood IT, Vanderah DJ, Walker ML. 2018. Short-chained oligo(ethylene oxide)-functionalized gold nanoparticles: realization of significant protein resistance. Analytical and bioanalytical chemistry 410(1): 145-154. DOI: 10.1007/s00216-017-0704-0
Critical assessment of methods of protein structure prediction (CASP)-Round XII.
Moult J, Fidelis K, Kryshtafovych A, Schwede T, Tramontano A, Moult J, Fidelis K, Kryshtafovych A, Schwede T, Tramontano A. 2018. Critical assessment of methods of protein structure prediction (CASP)-Round XII. Proteins 86 Suppl 1: 7-15. DOI: 10.1002/prot.25415
Breach: Host Membrane Penetration and Entry by Nonenveloped Viruses.
Kumar CS, Dey D, Ghosh S, Banerjee M, Kumar CS, Dey D, Ghosh S, Banerjee M. 2018. Breach: Host Membrane Penetration and Entry by Nonenveloped Viruses. Trends in microbiology 26(6): 525-537. DOI: 10.1016/j.tim.2017.09.010
Transcriptional and post-translational changes in the brain of mice deficient in cholesterol removal mediated by cytochrome P450 46A1 (CYP46A1).
Mast N, Lin JB, Anderson KW, Bjorkhem I, Pikuleva IA, Mast N, Lin JB, Anderson KW, Bjorkhem I, Pikuleva IA. 2017. Transcriptional and post-translational changes in the brain of mice deficient in cholesterol removal mediated by cytochrome P450 46A1 (CYP46A1). PloS one 12(10): e0187168. DOI: 10.1371/journal.pone.0187168
A tribute to Anna Tramontano (1957-2017).
Moult J, Fidelis K, Kryshtafovych A, Schwede T, Moult J, Fidelis K, Kryshtafovych A, Schwede T. 2018. A tribute to Anna Tramontano (1957-2017). Proteins 86 Suppl 1: 5-6. DOI: 10.1002/prot.25406
Connecting Biology to Electronics: Molecular Communication via Redox Modality.
Liu Y, Li J, Tschirhart T, Terrell JL, Kim E, Tsao CY, Kelly DL, Bentley WE, Payne GF, Liu Y, Li J, Tschirhart T, Terrell JL, Kim E, Tsao CY, Kelly DL, Bentley WE, Payne GF. 2017. Connecting Biology to Electronics: Molecular Communication via Redox Modality. Advanced healthcare materials 6(24): . DOI: 10.1002/adhm.201700789
Spectroelectrochemical Reverse Engineering DemonstratesThat Melanin's Redox and Radical Scavenging Activities Are Linked.
Kim E, Kang M, Tschirhart T, Malo M, Dadachova E, Cao G, Yin JJ, Bentley WE, Wang Z, Payne GF, Kim E, Kang M, Tschirhart T, Malo M, Dadachova E, Cao G, Yin JJ, Bentley WE, Wang Z, Payne GF. 2017. Spectroelectrochemical Reverse Engineering DemonstratesThat Melanin's Redox and Radical Scavenging Activities Are Linked. Biomacromolecules 18(12): 4084-4098. DOI: 10.1021/acs.biomac.7b01166
Why we don't want another "Synthesis".
Stoltzfus A, Stoltzfus A. 2017. Why we don't want another "Synthesis". Biology direct 12(1): 23. DOI: 10.1186/s13062-017-0194-1
Microscale Bioreactors for in situ characterization of GI epithelial cell physiology.
Costello CM, Phillipsen MB, Hartmanis LM, Kwasnica MA, Chen V, Hackam D, Chang MW, Bentley WE, March JC, Costello CM, Phillipsen MB, Hartmanis LM, Kwasnica MA, Chen V, Hackam D, Chang MW, Bentley WE, March JC. 2017. Microscale Bioreactors for in situ characterization of GI epithelial cell physiology. Scientific reports 7(1): 12515. DOI: 10.1038/s41598-017-12984-2