Publications

Harnessing formal concepts of biological mechanism to analyze human disease.
Darden L, Kundu K, Pal LR, Moult J, Darden L, Kundu K, Pal LR, Moult J. 2018. Harnessing formal concepts of biological mechanism to analyze human disease. PLoS computational biology 14(12): e1006540. DOI: 10.1371/journal.pcbi.1006540
Exploring protein-protein interactions using the site-identification by ligand competitive saturation methodology.
Yu W, Jo S, Lakkaraju SK, Weber DJ, MacKerell AD, Yu W, Jo S, Lakkaraju SK, Weber DJ, MacKerell AD. 2019. Exploring protein-protein interactions using the site-identification by ligand competitive saturation methodology. Proteins 87(4): 289-301. DOI: 10.1002/prot.25650
Enabling adoption of 2D-NMR for the higher order structure assessment of monoclonal antibody therapeutics.
Brinson RG, Marino JP, Delaglio F, Arbogast LW, Evans RM, Kearsley A, Gingras G, Ghasriani H, Aubin Y, Pierens GK, et al. 2019. Enabling adoption of 2D-NMR for the higher order structure assessment of monoclonal antibody therapeutics. mAbs 11(1): 94-105. DOI: 10.1080/19420862.2018.1544454
Multiple intramolecular trafficking signals in RESISTANCE TO POWDERY MILDEW 8.2 are engaged in activation of cell death and defense.
Huang YY, Zhang LL, Ma XF, Zhao ZX, Zhao JH, Zhao JQ, Fan J, Li Y, He P, Xiao S, et al. 2019. Multiple intramolecular trafficking signals in RESISTANCE TO POWDERY MILDEW 8.2 are engaged in activation of cell death and defense. The Plant journal : for cell and molecular biology 98(1): 55-70. DOI: 10.1111/tpj.14199
Biomimetic and Bioinspired Biotechnology.
Bentley WE, Martin DK, Gotoh T, Bentley WE, Martin DK, Gotoh T. 2018. Biomimetic and Bioinspired Biotechnology. Biotechnology journal 13(12): e1800670. DOI: 10.1002/biot.201800670
Zika virus NS5 protein antagonizes type I interferon production via blocking TBK1 activation.
Lin S, Yang S, He J, Guest JD, Ma Z, Yang L, Pierce BG, Tang Q, Zhang YJ, Lin S, Yang S, He J, Guest JD, Ma Z, Yang L, Pierce BG, Tang Q, Zhang YJ. 2019. Zika virus NS5 protein antagonizes type I interferon production via blocking TBK1 activation. Virology 527: 180-187. DOI: 10.1016/j.virol.2018.11.009
Selective suppression of excipient signals in 2D 1H-13C methyl spectra of biopharmaceutical products.
Arbogast LW, Delaglio F, Tolman JR, Marino JP, Arbogast LW, Delaglio F, Tolman JR, Marino JP. 2018. Selective suppression of excipient signals in 2D 1H-13C methyl spectra of biopharmaceutical products. Journal of biomolecular NMR 72(3-4): 149-161. DOI: 10.1007/s10858-018-0214-1
Reversibly Reconfigurable Cross-Linking Induces Fusion of Separate Chitosan Hydrogel Films.
He H, Li J, Cao X, Ruan C, Feng Q, Dong H, Payne GF, He H, Li J, Cao X, Ruan C, Feng Q, Dong H, Payne GF. 2018. Reversibly Reconfigurable Cross-Linking Induces Fusion of Separate Chitosan Hydrogel Films. ACS applied bio materials 1(5): 1695-1704. DOI: 10.1021/acsabm.8b00504
Safety Studies of Pneumococcal Endolysins Cpl-1 and Pal.
Harhala M, Nelson DC, Miernikiewicz P, Heselpoth RD, Brzezicka B, Majewska J, Linden SB, Shang X, Szymczak A, Lecion D, et al. 2018. Safety Studies of Pneumococcal Endolysins Cpl-1 and Pal. Viruses 10(11): . DOI: 10.3390/v10110638
DNA Sliding Clamps as Therapeutic Targets.
Altieri AS, Kelman Z, Altieri AS, Kelman Z. 2018. DNA Sliding Clamps as Therapeutic Targets. Frontiers in molecular biosciences 5: 87. DOI: 10.3389/fmolb.2018.00087
Iatrogenic hypertension: a bioinformatic analysis.
Botzer A, Finkelstein Y, Grossman E, Moult J, Unger R, Botzer A, Finkelstein Y, Grossman E, Moult J, Unger R. 2019. Iatrogenic hypertension: a bioinformatic analysis. The pharmacogenomics journal 19(4): 337-346. DOI: 10.1038/s41397-018-0062-0
A platform of genetically engineered bacteria as vehicles for localized delivery of therapeutics: Toward applications for Crohn's disease.
McKay R, Ghodasra M, Schardt J, Quan D, Pottash AE, Shang W, Jay SM, Payne GF, Chang MW, March JC, et al. 2018. A platform of genetically engineered bacteria as vehicles for localized delivery of therapeutics: Toward applications for Crohn's disease. Bioengineering & translational medicine 3(3): 209-221. DOI: 10.1002/btm2.10113
The 2018 Young Innovators of Cellular and Molecular Bioengineering.
King MR, Bentley WE, Eniola-Adefeso L, King MR, Bentley WE, Eniola-Adefeso L. 2018. The 2018 Young Innovators of Cellular and Molecular Bioengineering. Cellular and molecular bioengineering 11(5): 307-308. DOI: 10.1007/s12195-018-0554-7
Selective assembly and functionalization of miniaturized redox capacitor inside microdevices for microbial toxin and mammalian cell cytotoxicity analyses.
Shang W, Liu Y, Kim E, Tsao CY, Payne GF, Bentley WE, Shang W, Liu Y, Kim E, Tsao CY, Payne GF, Bentley WE. 2018. Selective assembly and functionalization of miniaturized redox capacitor inside microdevices for microbial toxin and mammalian cell cytotoxicity analyses. Lab on a chip 18(23): 3578-3587. DOI: 10.1039/c8lc00583d
Rv3272 encodes a novel Family III CoA transferase that alters the cell wall lipid profile and protects mycobacteria from acidic and oxidative stress.
Karade SS, Pandey S, Ansari A, Das S, Tripathi S, Arora A, Chopra S, Pratap JV, Dasgupta A, Karade SS, Pandey S, Ansari A, Das S, Tripathi S, Arora A, Chopra S, Pratap JV, Dasgupta A. 2019. Rv3272 encodes a novel Family III CoA transferase that alters the cell wall lipid profile and protects mycobacteria from acidic and oxidative stress. Biochimica et biophysica acta. Proteins and proteomics 1867(3): 317-330. DOI: 10.1016/j.bbapap.2018.10.011
Comparative transcriptome analysis of Poncirus trifoliata identifies a core set of genes involved in arbuscular mycorrhizal symbiosis.
An J, Sun M, van Velzen R, Ji C, Zheng Z, Limpens E, Bisseling T, Deng X, Xiao S, Pan Z, An J, Sun M, van Velzen R, Ji C, Zheng Z, Limpens E, Bisseling T, Deng X, Xiao S, Pan Z. 2018. Comparative transcriptome analysis of Poncirus trifoliata identifies a core set of genes involved in arbuscular mycorrhizal symbiosis. Journal of experimental botany 69(21): 5255-5264. DOI: 10.1093/jxb/ery283
Tobacco Mosaic Virus as a Versatile Platform for Molecular Assembly and Device Fabrication.
Chu S, Brown AD, Culver JN, Ghodssi R, Chu S, Brown AD, Culver JN, Ghodssi R. 2018. Tobacco Mosaic Virus as a Versatile Platform for Molecular Assembly and Device Fabrication. Biotechnology journal 13(12): e1800147. DOI: 10.1002/biot.201800147
Flexible Platform for In Situ Impedimetric Detection and Bioelectric Effect Treatment of Escherichia Coli Biofilms.
Huiszoon RC, Subramanian S, Ramiah Rajasekaran P, Beardslee LA, Bentley WE, Ghodssi R, Huiszoon RC, Subramanian S, Ramiah Rajasekaran P, Beardslee LA, Bentley WE, Ghodssi R. 2019. Flexible Platform for In Situ Impedimetric Detection and Bioelectric Effect Treatment of Escherichia Coli Biofilms. IEEE transactions on bio-medical engineering 66(5): 1337-1345. DOI: 10.1109/TBME.2018.2872896
Structural basis for broad neutralization of ebolaviruses by an antibody targeting the glycoprotein fusion loop.
Janus BM, van Dyk N, Zhao X, Howell KA, Soto C, Aman MJ, Li Y, Fuerst TR, Ofek G, Janus BM, van Dyk N, Zhao X, Howell KA, Soto C, Aman MJ, Li Y, Fuerst TR, Ofek G. 2018. Structural basis for broad neutralization of ebolaviruses by an antibody targeting the glycoprotein fusion loop. Nature communications 9(1): 3934. DOI: 10.1038/s41467-018-06113-4
Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew.
Wu Y, Ma X, Pan Z, Kale SD, Song Y, King H, Zhang Q, Presley C, Deng X, Wei CI, et al. 2018. Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew. BMC genomics 19(1): 705. DOI: 10.1186/s12864-018-5069-z