Publications

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Structural basis for T cell recognition of cancer neoantigens and implications for predicting neoepitope immunogenicity.
Mariuzza RA, Wu D, Pierce BG. 2023. Structural basis for T cell recognition of cancer neoantigens and implications for predicting neoepitope immunogenicity. Frontiers in immunology 14: 1303304. DOI: 10.3389/fimmu.2023.1303304
Characterizing Adeno-Associated Virus Capsids with Both Denaturing and Intact Analysis Methods.
Ryan JP, Kostelic MM, Hsieh CC, Powers J, Aspinwall C, Dodds JN, Schiel JE, Marty MT, Baker ES. 2023. Characterizing Adeno-Associated Virus Capsids with Both Denaturing and Intact Analysis Methods. Journal of the American Society for Mass Spectrometry : . DOI: 10.1021/jasms.3c00321
Hydrogen-Deuterium Exchange Dynamics of NISTmAb Measured by Small Angle Neutron Scattering.
Donnelly RB, Pingali SV, Heroux L, Brinson RG, Wagner NJ, Liu Y. 2023. Hydrogen-Deuterium Exchange Dynamics of NISTmAb Measured by Small Angle Neutron Scattering. Molecular pharmaceutics : . DOI: 10.1021/acs.molpharmaceut.3c00751
Cryo-EM and AFM visualize linear polyorganophosphazene: individual chains and single-chain assemblies with proteins.
Andrianov A, Hlushko R, Pozharski E, Prabhu V. 2023. Cryo-EM and AFM visualize linear polyorganophosphazene: individual chains and single-chain assemblies with proteins. Research square : . DOI: 10.21203/rs.3.rs-3411603/v1
Leaf abaxial immunity to powdery mildew in Arabidopsis is conferred by multiple defense mechanisms.
Wu Y, Sexton WK, Zhang Q, Bloodgood D, Wu Y, Hooks C, Coker F, Vasquez A, Wei CI, Xiao S. 2023. Leaf abaxial immunity to powdery mildew in Arabidopsis is conferred by multiple defense mechanisms. Journal of experimental botany : . DOI: 10.1093/jxb/erad450
Hydrophilic Interaction Liquid Chromatography at Subzero Temperature for Hydrogen-Deuterium Exchange Mass Spectrometry.
Anderson KW, Hudgens JW. 2023. Hydrophilic Interaction Liquid Chromatography at Subzero Temperature for Hydrogen-Deuterium Exchange Mass Spectrometry. Journal of the American Society for Mass Spectrometry : . DOI: 10.1021/jasms.3c00243
Critical assessment of methods of protein structure prediction (CASP)-Round XV.
Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J. 2023. Critical assessment of methods of protein structure prediction (CASP)-Round XV. Proteins : . DOI: 10.1002/prot.26617
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.
Lensink MF, Brysbaert G, Raouraoua N, Bates PA, Giulini M, Honorato RV, van Noort C, Teixeira JMC, Bonvin AMJJ, Kong R, et al. 2023. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment. Proteins : . DOI: 10.1002/prot.26609
Effects of glycans and hinge on dynamics in the IgG1 Fc.
Bergonzo C, Hoopes JT, Kelman Z, Gallagher DT. 2023. Effects of glycans and hinge on dynamics in the IgG1 Fc. Journal of biomolecular structure & dynamics : 1-9. DOI: 10.1080/07391102.2023.2270749
Thermal Characterization and Interaction of the Subunits from the Multimeric Bacteriophage Endolysin PlyC.
Hoopes JT, Heselpoth RD, Schwarz FP, Nelson DC. 2023. Thermal Characterization and Interaction of the Subunits from the Multimeric Bacteriophage Endolysin PlyC. Biology 12(10): . DOI: 10.3390/biology12101277
Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15.
Kryshtafovych A, Montelione GT, Rigden DJ, Mesdaghi S, Karaca E, Moult J. 2023. Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15. Proteins : . DOI: 10.1002/prot.26584
SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors.
Choy C, Chen J, Li J, Gallagher DT, Lu J, Wu D, Zou A, Hemani H, Baptiste BA, Wichmann E, et al. 2023. SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors. Nature communications 14(1): 6725. DOI: 10.1038/s41467-023-42430-z
Structure-function analyses reveal key molecular determinants of HIV-1 CRF01_AE resistance to the entry inhibitor temsavir.
Prévost J, Chen Y, Zhou F, Tolbert WD, Gasser R, Medjahed H, Nayrac M, Nguyen DN, Gottumukkala S, Hessell AJ, et al. 2023. Structure-function analyses reveal key molecular determinants of HIV-1 CRF01_AE resistance to the entry inhibitor temsavir. Nature communications 14(1): 6710. DOI: 10.1038/s41467-023-42500-2
Dendritic Cell-Mediated Cross-Priming by a Bispecific Neutralizing Antibody Boosts Cytotoxic T Cell Responses and Protects Mice against SARS-CoV-2.
Lázaro-Gorines R, Pérez P, Heras-Murillo I, Adán-Barrientos I, Albericio G, Astorgano D, Flores S, Luczkowiak J, Labiod N, Harwood SL, et al. 2023. Dendritic Cell-Mediated Cross-Priming by a Bispecific Neutralizing Antibody Boosts Cytotoxic T Cell Responses and Protects Mice against SARS-CoV-2. Advanced science (Weinheim, Baden-Wurttemberg, Germany) : e2304818. DOI: 10.1002/advs.202304818
Non-β Lactam Inhibitors of the Serine β-Lactamase blaCTX-M15 in Drug-Resistant Salmonella typhi.
Ahmad F, Parvaiz N, MacKerell AD, Azam SS. 2023. Non-β Lactam Inhibitors of the Serine β-Lactamase blaCTX-M15 in Drug-Resistant <i>Salmonella typhi</i>. Journal of chemical information and modeling : . DOI: 10.1021/acs.jcim.3c00780