Publications

Computational models in the service of X-ray and cryo-electron microscopy structure determination.
Kryshtafovych A, Moult J, Albrecht R, Chang GA, Chao K, Fraser A, Greenfield J, Hartmann MD, Herzberg O, Josts I, et al. 2021. Computational models in the service of X-ray and cryo-electron microscopy structure determination. Proteins 89(12): 1633-1646. DOI: 10.1002/prot.26223
Genome Sequence Resource for Erysiphe necator NAFU1, a Grapevine Powdery Mildew Isolate Identified in Shaanxi Province of China.
Zhang X, Mu B, Cui K, Liu M, Ke G, Han Y, Wu Y, Xiao S, Wen YQ, Zhang X, Mu B, Cui K, Liu M, Ke G, Han Y, Wu Y, Xiao S, Wen YQ. 2021. Genome Sequence Resource for <i>Erysiphe necator</i> NAFU1, a Grapevine Powdery Mildew Isolate Identified in Shaanxi Province of China. Molecular plant-microbe interactions : MPMI : MPMI03210061A. DOI: 10.1094/MPMI-03-21-0061-A
The calcium-binding protein S100B reduces IL6 production in malignant melanoma via inhibition of RSK cellular signaling.
Alasady MJ, Terry AR, Pierce AD, Cavalier MC, Blaha CS, Adipietro KA, Wilder PT, Weber DJ, Hay N, Alasady MJ, Terry AR, Pierce AD, Cavalier MC, Blaha CS, Adipietro KA, Wilder PT, Weber DJ, Hay N. 2021. The calcium-binding protein S100B reduces IL6 production in malignant melanoma via inhibition of RSK cellular signaling. PloS one 16(8): e0256238. DOI: 10.1371/journal.pone.0256238
Ionization and structural properties of mRNA lipid nanoparticles influence expression in intramuscular and intravascular administration.
Carrasco MJ, Alishetty S, Alameh MG, Said H, Wright L, Paige M, Soliman O, Weissman D, Cleveland TE, Grishaev A, et al. 2021. Ionization and structural properties of mRNA lipid nanoparticles influence expression in intramuscular and intravascular administration. Communications biology 4(1): 956. DOI: 10.1038/s42003-021-02441-2
An Extract of Taro (Colocasia esculenta) Mediates Potent Inhibitory Actions on Metastatic and Cancer Stem Cells by Tumor Cell-Autonomous and Immune-Dependent Mechanisms.
Kundu N, Ma X, Hoag S, Wang F, Ibrahim A, Godoy-Ruiz R, Weber DJ, Fulton AM, Kundu N, Ma X, Hoag S, Wang F, Ibrahim A, Godoy-Ruiz R, Weber DJ, Fulton AM. 2021. An Extract of Taro (<i>Colocasia esculenta</i>) Mediates Potent Inhibitory Actions on Metastatic and Cancer Stem Cells by Tumor Cell-Autonomous and Immune-Dependent Mechanisms. Breast cancer : basic and clinical research 15: 11782234211034937. DOI: 10.1177/11782234211034937
Mediated electrochemistry for redox-based biological targeting: entangling sensing and actuation for maximizing information transfer.
Motabar D, Li J, Payne GF, Bentley WE, Motabar D, Li J, Payne GF, Bentley WE. 2021. Mediated electrochemistry for redox-based biological targeting: entangling sensing and actuation for maximizing information transfer. Current opinion in biotechnology 71: 137-144. DOI: 10.1016/j.copbio.2021.07.017
Pre-vaccination and early B cell signatures predict antibody response to SARS-CoV-2 mRNA vaccine.
Kardava L, Rachmaninoff N, Lau WW, Buckner CM, Trihemasava K, de Assis FL, Wang W, Zhang X, Wang Y, Chiang CI, et al. 2021. Pre-vaccination and early B cell signatures predict antibody response to SARS-CoV-2 mRNA vaccine. medRxiv : the preprint server for health sciences : . DOI: 10.1101/2021.07.06.21259528
Drug Delivery Systems: A Few Examples of Applications, Drug Cargoes, and Administration Routes.
Muro S, Muro S. 2021. Drug Delivery Systems: A Few Examples of Applications, Drug Cargoes, and Administration Routes. Current pharmaceutical design 27(17): 1975-1976. DOI: 10.2174/138161282717210524161745
A Redox-Based Autoinduction Strategy to Facilitate Expression of 5xCys-Tagged Proteins for Electrobiofabrication.
Wang S, Tsao CY, Motabar D, Li J, Payne GF, Bentley WE, Wang S, Tsao CY, Motabar D, Li J, Payne GF, Bentley WE. 2021. A Redox-Based Autoinduction Strategy to Facilitate Expression of 5xCys-Tagged Proteins for Electrobiofabrication. Frontiers in microbiology 12: 675729. DOI: 10.3389/fmicb.2021.675729
T Cell Receptor Genotype and Ubash3a Determine Susceptibility to Rat Autoimmune Diabetes.
Mordes JP, Cort L, Liu Z, Eberwine R, Blankenhorn EP, Pierce BG, Mordes JP, Cort L, Liu Z, Eberwine R, Blankenhorn EP, Pierce BG. 2021. T Cell Receptor Genotype and <i>Ubash3a</i> Determine Susceptibility to Rat Autoimmune Diabetes. Genes 12(6): . DOI: 10.3390/genes12060852
Electronic signals are electrogenetically relayed to control cell growth and co-culture composition.
Stephens K, Zakaria FR, VanArsdale E, Payne GF, Bentley WE, Stephens K, Zakaria FR, VanArsdale E, Payne GF, Bentley WE. 2021. Electronic signals are electrogenetically relayed to control cell growth and co-culture composition. Metabolic engineering communications 13: e00176. DOI: 10.1016/j.mec.2021.e00176
Transient knockdown of Anopheles stephensi LRIM1 using RNAi increases Plasmodium falciparum sporozoite salivary gland infections.
Billingsley PF, George KI, Eappen AG, Harrell RA, Alford R, Li T, Chakravarty S, Sim BKL, Hoffman SL, O'Brochta DA, Billingsley PF, George KI, Eappen AG, Harrell RA, Alford R, Li T, Chakravarty S, Sim BKL, Hoffman SL, O'Brochta DA. 2021. Transient knockdown of Anopheles stephensi LRIM1 using RNAi increases Plasmodium falciparum sporozoite salivary gland infections. Malaria journal 20(1): 284. DOI: 10.1186/s12936-021-03818-8
Principal Component Analysis of 1D 1H Diffusion Edited NMR Spectra of Protein Therapeutics.
Elliott KW, Delaglio F, Wikström M, Marino JP, Arbogast LW, Elliott KW, Delaglio F, Wikström M, Marino JP, Arbogast LW. 2021. Principal Component Analysis of 1D 1H Diffusion Edited NMR Spectra of Protein Therapeutics. Journal of pharmaceutical sciences 110(10): 3385-3394. DOI: 10.1016/j.xphs.2021.06.027
Mediated Electrochemical Probing: A Systems-Level Tool for Redox Biology.
Zhao Z, Ozcan EE, VanArsdale E, Li J, Kim E, Sandler AD, Kelly DL, Bentley WE, Payne GF, Zhao Z, Ozcan EE, VanArsdale E, Li J, Kim E, Sandler AD, Kelly DL, Bentley WE, Payne GF. 2021. Mediated Electrochemical Probing: A Systems-Level Tool for Redox Biology. ACS chemical biology 16(7): 1099-1110. DOI: 10.1021/acschembio.1c00267
1HN, 13C, and 15N backbone resonance assignments of the SET/TAF-1β/I2PP2A oncoprotein (residues 23-225).
Roth BM, DePalma RM, Cook ME, Varney KM, Weber DJ, Ogretmen B, Roth BM, DePalma RM, Cook ME, Varney KM, Weber DJ, Ogretmen B. 2021. 1HN, 13C, and 15N backbone resonance assignments of the SET/TAF-1β/I2PP2A oncoprotein (residues 23-225). Biomolecular NMR assignments 15(2): 383-387. DOI: 10.1007/s12104-021-10034-7
Copper-binding anticancer peptides from the piscidin family: an expanded mechanism that encompasses physical and chemical bilayer disruption.
Comert F, Heinrich F, Chowdhury A, Schoeneck M, Darling C, Anderson KW, Libardo MDJ, Angeles-Boza AM, Silin V, Cotten ML, et al. 2021. Copper-binding anticancer peptides from the piscidin family: an expanded mechanism that encompasses physical and chemical bilayer disruption. Scientific reports 11(1): 12620. DOI: 10.1038/s41598-021-91670-w
MecCog: A knowledge representation framework for genetic disease mechanism.
Kundu K, Darden L, Moult J, Kundu K, Darden L, Moult J. 2021. MecCog: A knowledge representation framework for genetic disease mechanism. Bioinformatics (Oxford, England) : . DOI: 10.1093/bioinformatics/btab432
Inspecting Insulin Products Using Water Proton NMR. I. Noninvasive vs Invasive Inspection.
Taraban MB, Wang Y, Briggs KT, Yu YB, Taraban MB, Wang Y, Briggs KT, Yu YB. 2021. Inspecting Insulin Products Using Water Proton NMR. I. Noninvasive vs Invasive Inspection. Journal of diabetes science and technology : 19322968211023806. DOI: 10.1177/19322968211023806
Structural Insights into the Mechanism of Base Excision by MBD4.
Pidugu LS, Bright H, Lin WJ, Majumdar C, Van Ostrand RP, David SS, Pozharski E, Drohat AC, Pidugu LS, Bright H, Lin WJ, Majumdar C, Van Ostrand RP, David SS, Pozharski E, Drohat AC. 2021. Structural Insights into the Mechanism of Base Excision by MBD4. Journal of molecular biology 433(15): 167097. DOI: 10.1016/j.jmb.2021.167097
The emerging landscape of single-molecule protein sequencing technologies.
Alfaro JA, Bohländer P, Dai M, Filius M, Howard CJ, van Kooten XF, Ohayon S, Pomorski A, Schmid S, Aksimentiev A, et al. 2021. The emerging landscape of single-molecule protein sequencing technologies. Nature methods 18(6): 604-617. DOI: 10.1038/s41592-021-01143-1