IBBR Publications

Found 243 results
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2004
Tigerström A, Schwarz F, Karlsson G, Okvist M, Alvarez-Rúa C, Maeder D, Robb FT, Sjölin L. Effects of a novel disulfide bond and engineered electrostatic interactions on the thermostability of azurin. Biochemistry. 2004 ;43(39):12563-74.
Grishaev A, Bax A. An empirical backbone-backbone hydrogen-bonding potential in proteins and its applications to NMR structure refinement and validation. J Am Chem Soc. 2004 ;126(23):7281-92.
Lim K, Sarikaya E, Galkin A, Krajewski W, Pullalarevu S, Shin J-H, Kelman Z, Howard A, Herzberg O. Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: a protein with no known sequence homologues. Proteins. 2004 ;56(3):564-71.
Ladner JE, Parsons JF, Rife CL, Gilliland GL, Armstrong RN. Parallel evolutionary pathways for glutathione transferases: structure and mechanism of the mitochondrial class kappa enzyme rGSTK1-1. Biochemistry. 2004 ;43(2):352-61.
Cho S, Velikovsky CA, Swaminathan CP, Houtman JCD, Samelson LE, Mariuzza RA. Structural basis for differential recognition of tyrosine-phosphorylated sites in the linker for activation of T cells (LAT) by the adaptor Gads. EMBO J. 2004 ;23(7):1441-51.
Guan R, Roychowdhury A, Ember B, Kumar S, Boons G-J, Mariuzza RA. Structural basis for peptidoglycan binding by peptidoglycan recognition proteins. Proc Natl Acad Sci U S A. 2004 ;101(49):17168-73.
Parsons JF, Song F, Parsons L, Calabrese K, Eisenstein E, Ladner JE. Structure and function of the phenazine biosynthesis protein PhzF from Pseudomonas fluorescens 2-79. Biochemistry. 2004 ;43(39):12427-35.
Ofek GA, Tang M, Sambor A, Katinger H, Mascola JR, Wyatt R, Kwong PD. Structure and mechanistic analysis of the anti-human immunodeficiency virus type 1 antibody 2F5 in complex with its gp41 epitope. J Virol. 2004 ;78(19):10724-37.
Dimasi N, Moretta A, Moretta L, Biassoni R, Mariuzza RA. Structure of the saccharide-binding domain of the human natural killer cell inhibitory receptor p75/AIRM1. Acta Crystallogr D Biol Crystallogr. 2004 ;60(Pt 2):401-3.
Galkin A, Sarikaya E, Lehmann C, Howard A, Herzberg O. X-ray structure of HI0817 from Haemophilus influenzae: protein of unknown function with a novel fold. Proteins. 2004 ;57(4):874-7.
Lehmann C, Doseeva V, Pullalarevu S, Krajewski W, Howard A, Herzberg O. YbdK is a carboxylate-amine ligase with a gamma-glutamyl:Cysteine ligase activity: crystal structure and enzymatic assays. Proteins. 2004 ;56(2):376-83.
2003
Janin J, Henrick K, Moult J, Eyck LTen, Sternberg MJE, Vajda S, Vakser I, Wodak SJ. CAPRI: a Critical Assessment of PRedicted Interactions. Proteins. 2003 ;52(1):2-9.
Lim K, Tempczyk A, Bonander N, Toedt J, Howard A, Eisenstein E, Herzberg O. A catalytic mechanism for D-Tyr-tRNATyr deacylase based on the crystal structure of Hemophilus influenzae HI0670. J Biol Chem. 2003 ;278(15):13496-502.
Moult J, Fidelis K, Zemla A, Hubbard T. Critical assessment of methods of protein structure prediction (CASP)-round V. Proteins. 2003 ;53 Suppl 6:334-9.
Ladner JE, Obmolova G, Teplyakov A, Howard AJ, Khil PP, R Camerini-Otero D, Gilliland GL. Crystal structure of Escherichia coli protein ybgI, a toroidal structure with a dinuclear metal site. BMC Struct Biol. 2003 ;3:7.
Toth EA, Li Y, Sawaya MR, Cheng Y, Ellenberger T. The crystal structure of the bifunctional primase-helicase of bacteriophage T7. Mol Cell. 2003 ;12(5):1113-23.
Teplyakov A, Obmolova G, Chu SY, Toedt J, Eisenstein E, Howard AJ, Gilliland GL. Crystal structure of the YchF protein reveals binding sites for GTP and nucleic acid. J Bacteriol. 2003 ;185(14):4031-7.
Lim K, Tempczyk A, Parsons JF, Bonander N, Toedt J, Kelman Z, Howard A, Eisenstein E, Herzberg O. Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR. Proteins. 2003 ;50(2):375-9.
Yang J, Swaminathan CP, Huang Y, Guan R, Cho S, Kieke MC, Kranz DM, Mariuzza RA, Sundberg EJ. Dissecting cooperative and additive binding energetics in the affinity maturation pathway of a protein-protein interface. J Biol Chem. 2003 ;278(50):50412-21.
Li Y, Urrutia M, Smith-Gill SJ, Mariuzza RA. Dissection of binding interactions in the complex between the anti-lysozyme antibody HyHEL-63 and its antigen. Biochemistry. 2003 ;42(1):11-22.
Majeed S, Ofek GA, Belachew A, Huang C-chin, Zhou T, Kwong PD. Enhancing protein crystallization through precipitant synergy. Structure. 2003 ;11(9):1061-70.
Dimasi N, Moretta L, Biassoni R, Mariuzza RA. Expression, crystallization and preliminary crystallographic analysis of the extracellular IgV-like domain of the human natural killer cell inhibitory receptor p75/AIRM1. Acta Crystallogr D Biol Crystallogr. 2003 ;59(Pt 10):1856-8.
Lehmann C, Lim K, Chalamasetty VRao, Krajewski W, Melamud E, Galkin A, Howard A, Kelman Z, Reddy PT, Murzin AG, et al. The HI0073/HI0074 protein pair from Haemophilus influenzae is a member of a new nucleotidyltransferase family: structure, sequence analyses, and solution studies. Proteins. 2003 ;50(2):249-60.
Parsons L, Bonander N, Eisenstein E, Gilson M, Kairys V, Orban J. Solution structure and functional ligand screening of HI0719, a highly conserved protein from bacteria to humans in the YjgF/YER057c/UK114 family. Biochemistry. 2003 ;42(1):80-9.
Parsons JF, Calabrese K, Eisenstein E, Ladner JE. Structure and mechanism of Pseudomonas aeruginosa PhzD, an isochorismatase from the phenazine biosynthetic pathway. Biochemistry. 2003 ;42(19):5684-93.