Publications

Homologous Quorum Sensing Regulatory Circuit: A Dual-Input Genetic Controller for Modulating Quorum Sensing-Mediated Protein Expression in E. coli.
Hauk P, Stephens K, Virgile C, VanArsdale E, Pottash AE, Schardt JS, Jay SM, Sintim HO, Bentley WE, Hauk P, Stephens K, Virgile C, VanArsdale E, Pottash AE, Schardt JS, Jay SM, Sintim HO, Bentley WE. 2020. Homologous Quorum Sensing Regulatory Circuit: A Dual-Input Genetic Controller for Modulating Quorum Sensing-Mediated Protein Expression in <i>E. coli</i>. ACS synthetic biology 9(10): 2692-2702. DOI: 10.1021/acssynbio.0c00179
CRISPR/Cas9-mediated mutagenesis of VvMLO3 results in enhanced resistance to powdery mildew in grapevine (Vitis vinifera).
Wan DY, Guo Y, Cheng Y, Hu Y, Xiao S, Wang Y, Wen YQ, Wan DY, Guo Y, Cheng Y, Hu Y, Xiao S, Wang Y, Wen YQ. 2020. CRISPR/Cas9-mediated mutagenesis of <i>VvMLO3</i> results in enhanced resistance to powdery mildew in grapevine (<i>Vitis vinifera</i>). Horticulture research 7: 116. DOI: 10.1038/s41438-020-0339-8
Discovery and Preclinical Development of Antigiardiasis Fumagillol Derivatives.
Padia J, Kulakova L, Galkin A, Herzberg O, Padia J, Kulakova L, Galkin A, Herzberg O. 2020. Discovery and Preclinical Development of Antigiardiasis Fumagillol Derivatives. Antimicrobial agents and chemotherapy 64(10): . DOI: 10.1128/AAC.00582-20
RPW8.1 enhances the ethylene-signaling pathway to feedback-attenuate its mediated cell death and disease resistance in Arabidopsis.
Zhao ZX, Feng Q, Liu PQ, He XR, Zhao JH, Xu YJ, Zhang LL, Huang YY, Zhao JQ, Fan J, et al. 2021. RPW8.1 enhances the ethylene-signaling pathway to feedback-attenuate its mediated cell death and disease resistance in Arabidopsis. The New phytologist 229(1): 516-531. DOI: 10.1111/nph.16857
Dynamic changes impact the plum pox virus population structure during leaf and bud development.
Tamukong YB, Collum TD, Stone AL, Kappagantu M, Sherman DJ, Rogers EE, Dardick C, Culver JN, Tamukong YB, Collum TD, Stone AL, Kappagantu M, Sherman DJ, Rogers EE, Dardick C, Culver JN. 2020. Dynamic changes impact the plum pox virus population structure during leaf and bud development. Virology 548: 192-199. DOI: 10.1016/j.virol.2020.06.014
In Silico Identification of the Full Complement of Subtilase-Encoding Genes and Characterization of the Role of TaSBT1.7 in Resistance Against Stripe Rust in Wheat.
Yang Y, Zhang F, Zhou T, Fang A, Yu Y, Bi C, Xiao S, Yang Y, Zhang F, Zhou T, Fang A, Yu Y, Bi C, Xiao S. 2021. In Silico Identification of the Full Complement of Subtilase-Encoding Genes and Characterization of the Role of <i>TaSBT1.7</i> in Resistance Against Stripe Rust in Wheat. Phytopathology 111(2): 398-407. DOI: 10.1094/PHYTO-05-20-0176-R
Principal component analysis for automated classification of 2D spectra and interferograms of protein therapeutics: influence of noise, reconstruction details, and data preparation.
Brinson RG, Elliott KW, Arbogast LW, Sheen DA, Giddens JP, Marino JP, Delaglio F, Brinson RG, Elliott KW, Arbogast LW, Sheen DA, Giddens JP, Marino JP, Delaglio F. 2020. Principal component analysis for automated classification of 2D spectra and interferograms of protein therapeutics: influence of noise, reconstruction details, and data preparation. Journal of biomolecular NMR 74(10-11): 643-656. DOI: 10.1007/s10858-020-00332-y
A High-Quality Genome Resource of Botrytis fragariae, a New and Rapidly Spreading Fungal Pathogen Causing Strawberry Gray Mold in the United States.
Wu Y, Saski C, Schnabel G, Xiao S, Hu M, Wu Y, Saski C, Schnabel G, Xiao S, Hu M. 2021. A High-Quality Genome Resource of <i>Botrytis fragariae</i>, a New and Rapidly Spreading Fungal Pathogen Causing Strawberry Gray Mold in the United States. Phytopathology 111(3): 496-499. DOI: 10.1094/PHYTO-05-20-0204-IA
Leveraging nature's biomolecular designs in next-generation protein sequencing reagent development.
Tullman J, Marino JP, Kelman Z, Tullman J, Marino JP, Kelman Z. 2020. Leveraging nature's biomolecular designs in next-generation protein sequencing reagent development. Applied microbiology and biotechnology 104(17): 7261-7271. DOI: 10.1007/s00253-020-10745-2
CoV3D: A database and resource for high resolution coronavirus protein structures.
Gowthaman R, Guest JD, Yin R, Adolf-Bryfogle J, Schief WR, Pierce BG, Gowthaman R, Guest JD, Yin R, Adolf-Bryfogle J, Schief WR, Pierce BG. 2020. CoV3D: A database and resource for high resolution coronavirus protein structures. bioRxiv : the preprint server for biology : . DOI: 10.1101/2020.05.12.091983
Transglutaminase-mediated assembly of multi-enzyme pathway onto TMV brush surfaces for synthesis of bacterial autoinducer-2.
Bhokisham N, Liu Y, Brown AD, Payne GF, Culver JN, Bentley WE, Bhokisham N, Liu Y, Brown AD, Payne GF, Culver JN, Bentley WE. 2020. Transglutaminase-mediated assembly of multi-enzyme pathway onto TMV brush surfaces for synthesis of bacterial autoinducer-2. Biofabrication 12(4): 045017. DOI: 10.1088/1758-5090/ab9e7a
Polyelectrolyte in Electric Field: Disparate Conformational Behavior along an Aminopolysaccharide Chain.
Mahinthichaichan P, Tsai CC, Payne GF, Shen J, Mahinthichaichan P, Tsai CC, Payne GF, Shen J. 2020. Polyelectrolyte in Electric Field: Disparate Conformational Behavior along an Aminopolysaccharide Chain. ACS omega 5(21): 12016-12026. DOI: 10.1021/acsomega.0c00164
Avoidance of Self during CRISPR Immunization.
Weissman JL, Stoltzfus A, Westra ER, Johnson PLF, Weissman JL, Stoltzfus A, Westra ER, Johnson PLF. 2020. Avoidance of Self during CRISPR Immunization. Trends in microbiology 28(7): 543-553. DOI: 10.1016/j.tim.2020.02.005
In Vivo and In Vitro Potency of Polyphosphazene Immunoadjuvants with Hepatitis C Virus Antigen and the Role of Their Supramolecular Assembly.
Andrianov AK, Marin A, Wang R, Chowdhury A, Agnihotri P, Yunus AS, Pierce BG, Mariuzza RA, Fuerst TR, Andrianov AK, Marin A, Wang R, Chowdhury A, Agnihotri P, Yunus AS, Pierce BG, Mariuzza RA, Fuerst TR. 2021. <i>In Vivo</i> and <i>In Vitro</i> Potency of Polyphosphazene Immunoadjuvants with Hepatitis C Virus Antigen and the Role of Their Supramolecular Assembly. Molecular pharmaceutics 18(2): 726-734. DOI: 10.1021/acs.molpharmaceut.0c00487
Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen.
Wu D, Gallagher DT, Gowthaman R, Pierce BG, Mariuzza RA, Wu D, Gallagher DT, Gowthaman R, Pierce BG, Mariuzza RA. 2020. Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen. Nature communications 11(1): 2908. DOI: 10.1038/s41467-020-16755-y
Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, et al. 2020. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature methods 17(7): 665-680. DOI: 10.1038/s41592-020-0848-2
Quality assurance at the point-of-care: Noninvasively detecting vaccine freezing variability using water proton NMR.
Briggs KT, Taraban MB, Yu YB, Briggs KT, Taraban MB, Yu YB. 2020. Quality assurance at the point-of-care: Noninvasively detecting vaccine freezing variability using water proton NMR. Vaccine 38(31): 4853-4860. DOI: 10.1016/j.vaccine.2020.05.049
Viral Hacks of the Plant Vasculature: The Role of Phloem Alterations in Systemic Virus Infection.
Kappagantu M, Collum TD, Dardick C, Culver JN, Kappagantu M, Collum TD, Dardick C, Culver JN. 2020. Viral Hacks of the Plant Vasculature: The Role of Phloem Alterations in Systemic Virus Infection. Annual review of virology 7(1): 351-370. DOI: 10.1146/annurev-virology-010320-072410
A redox-based electrogenetic CRISPR system to connect with and control biological information networks.
Bhokisham N, VanArsdale E, Stephens KT, Hauk P, Payne GF, Bentley WE, Bhokisham N, VanArsdale E, Stephens KT, Hauk P, Payne GF, Bentley WE. 2020. A redox-based electrogenetic CRISPR system to connect with and control biological information networks. Nature communications 11(1): 2427. DOI: 10.1038/s41467-020-16249-x
De novo protein design enables the precise induction of RSV-neutralizing antibodies.
Sesterhenn F, Yang C, Bonet J, Cramer JT, Wen X, Wang Y, Chiang CI, Abriata LA, Kucharska I, Castoro G, et al. 2020. De novo protein design enables the precise induction of RSV-neutralizing antibodies. Science (New York, N.Y.) 368(6492): . DOI: 10.1126/science.aay5051