Publications

Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees.
Nguyen VD, Nguyen TH, Tayeen ASM, Laughinghouse HD, Sánchez-Reyes LL, Wiggins J, Pontelli E, Mozzherin D, O'Meara B, Stoltzfus A, Nguyen VD, Nguyen TH, Tayeen ASM, Laughinghouse HD, Sánchez-Reyes LL, Wiggins J, Pontelli E, Mozzherin D, O'Meara B, Stoltzfus A. 2020. Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees. Evolutionary bioinformatics online 16: 1176934319899384. DOI: 10.1177/1176934319899384
The importance and future of biochemical engineering.
Whitehead TA, Banta S, Bentley WE, Betenbaugh MJ, Chan C, Clark DS, Hoesli CA, Jewett MC, Junker B, Koffas M, et al. 2020. The importance and future of biochemical engineering. Biotechnology and bioengineering 117(8): 2305-2318. DOI: 10.1002/bit.27364
Synthetic Biology for Manipulating Quorum Sensing in Microbial Consortia.
Stephens K, Bentley WE, Stephens K, Bentley WE. 2020. Synthetic Biology for Manipulating Quorum Sensing in Microbial Consortia. Trends in microbiology 28(8): 633-643. DOI: 10.1016/j.tim.2020.03.009
Differential Interactions of Piscidins with Phospholipids and Lipopolysaccharides at Membrane Interfaces.
Cetuk H, Maramba J, Britt M, Scott AJ, Ernst RK, Mihailescu M, Cotten ML, Sukharev S, Cetuk H, Maramba J, Britt M, Scott AJ, Ernst RK, Mihailescu M, Cotten ML, Sukharev S. 2020. Differential Interactions of Piscidins with Phospholipids and Lipopolysaccharides at Membrane Interfaces. Langmuir : the ACS journal of surfaces and colloids 36(18): 5065-5077. DOI: 10.1021/acs.langmuir.0c00017
Cellular origins and genetic landscape of cutaneous gamma delta T cell lymphomas.
Daniels J, Doukas PG, Escala MEM, Ringbloom KG, Shih DJH, Yang J, Tegtmeyer K, Park J, Thomas JJ, Selli ME, et al. 2020. Cellular origins and genetic landscape of cutaneous gamma delta T cell lymphomas. Nature communications 11(1): 1806. DOI: 10.1038/s41467-020-15572-7
Comparative Analysis of One-Dimensional Protein Fingerprint by Line Shape Enhancement and Two-Dimensional 1H,13C Methyl NMR Methods for Characterization of the Higher Order Structure of IgG1 Monoclonal Antibodies.
Elliott KW, Ghasriani H, Wikström M, Giddens JP, Aubin Y, Delaglio F, Marino JP, Arbogast LW, Elliott KW, Ghasriani H, Wikström M, Giddens JP, Aubin Y, Delaglio F, Marino JP, Arbogast LW. 2020. Comparative Analysis of One-Dimensional Protein Fingerprint by Line Shape Enhancement and Two-Dimensional 1H,13C Methyl NMR Methods for Characterization of the Higher Order Structure of IgG1 Monoclonal Antibodies. Analytical chemistry 92(9): 6366-6373. DOI: 10.1021/acs.analchem.9b05385
Best Practices in Utilization of 2D-NMR Spectral Data as the Input for Chemometric Analysis in Biopharmaceutical Applications.
Brinson RG, Arbogast LW, Marino JP, Delaglio F, Brinson RG, Arbogast LW, Marino JP, Delaglio F. 2020. Best Practices in Utilization of 2D-NMR Spectral Data as the Input for Chemometric Analysis in Biopharmaceutical Applications. Journal of chemical information and modeling 60(4): 2339-2355. DOI: 10.1021/acs.jcim.0c00081
A Potent Host Defense Peptide Triggers DNA Damage and Is Active against Multidrug-Resistant Gram-Negative Pathogens.
Juliano SA, Serafim LF, Duay SS, Heredia Chavez M, Sharma G, Rooney M, Comert F, Pierce S, Radulescu A, Cotten ML, et al. 2020. A Potent Host Defense Peptide Triggers DNA Damage and Is Active against Multidrug-Resistant Gram-Negative Pathogens. ACS infectious diseases 6(5): 1250-1263. DOI: 10.1021/acsinfecdis.0c00051
Correction to: 1HN, 13C, and 15N resonance assignments of human calmodulin bound to a peptide derived from the STRA6 vitamin A transporter (CaMBP2).
Varney KM, Wilder PT, Godoy-Ruiz R, Mancia F, Weber DJ, Varney KM, Wilder PT, Godoy-Ruiz R, Mancia F, Weber DJ. 2020. Correction to: 1HN, 13C, and 15N resonance assignments of human calmodulin bound to a peptide derived from the STRA6 vitamin A transporter (CaMBP2). Biomolecular NMR assignments 14(2): 347. DOI: 10.1007/s12104-020-09942-x
A Coculture Based Tyrosine-Tyrosinase Electrochemical Gene Circuit for Connecting Cellular Communication with Electronic Networks.
VanArsdale E, Hörnström D, Sjöberg G, Järbur I, Pitzer J, Payne GF, van Maris AJA, Bentley WE, VanArsdale E, Hörnström D, Sjöberg G, Järbur I, Pitzer J, Payne GF, van Maris AJA, Bentley WE. 2020. A Coculture Based Tyrosine-Tyrosinase Electrochemical Gene Circuit for Connecting Cellular Communication with Electronic Networks. ACS synthetic biology 9(5): 1117-1128. DOI: 10.1021/acssynbio.9b00469
Mass Spectrometry Advances and Perspectives for the Characterization of Emerging Adoptive Cell Therapies.
Lombard-Banek C, Schiel JE, Lombard-Banek C, Schiel JE. 2020. Mass Spectrometry Advances and Perspectives for the Characterization of Emerging Adoptive Cell Therapies. Molecules (Basel, Switzerland) 25(6): . DOI: 10.3390/molecules25061396
Quorum Sensing Communication: Molecularly Connecting Cells, Their Neighbors, and Even Devices.
Wang S, Payne GF, Bentley WE, Wang S, Payne GF, Bentley WE. 2020. Quorum Sensing Communication: Molecularly Connecting Cells, Their Neighbors, and Even Devices. Annual review of chemical and biomolecular engineering 11: 447-468. DOI: 10.1146/annurev-chembioeng-101519-124728
A New Approach to Assess mAb Aggregation.
Turko IV, Turko IV. 2020. A New Approach to Assess mAb Aggregation. Methods in molecular biology (Clifton, N.J.) 2131: 245-254. DOI: 10.1007/978-1-0716-0389-5_12
Modeling and Viewing T Cell Receptors Using TCRmodel and TCR3d.
Gowthaman R, Pierce BG, Gowthaman R, Pierce BG. 2020. Modeling and Viewing T Cell Receptors Using TCRmodel and TCR3d. Methods in molecular biology (Clifton, N.J.) 2120: 197-212. DOI: 10.1007/978-1-0716-0327-7_14
Redox Is a Global Biodevice Information Processing Modality.
Kim E, Li J, Kang M, Kelly DL, Chen S, Napolitano A, Panzella L, Shi X, Yan K, Wu S, et al. 2019. Redox Is a Global Biodevice Information Processing Modality. Proceedings of the IEEE. Institute of Electrical and Electronics Engineers 107(7): 1402-1424. DOI: 10.1109/JPROC.2019.2908582
Catechol-Based Capacitor for Redox-Linked Bioelectronics.
Wu S, Kim E, Li J, Bentley WE, Shi XW, Payne GF, Wu S, Kim E, Li J, Bentley WE, Shi XW, Payne GF. 2019. Catechol-Based Capacitor for Redox-Linked Bioelectronics. ACS applied electronic materials 1(8): 1337-1347. DOI: 10.1021/acsaelm.9b00272
HIV-1 gp120-CD4-Induced Antibody Complex Elicits CD4 Binding Site-Specific Antibody Response in Mice.
Galkin A, Chen Y, Guenaga J, O'Dell S, Acevedo R, Steinhardt JJ, Wang Y, Wilson R, Chiang CI, Doria-Rose N, et al. 2020. HIV-1 gp120-CD4-Induced Antibody Complex Elicits CD4 Binding Site-Specific Antibody Response in Mice. Journal of immunology (Baltimore, Md. : 1950) 204(6): 1543-1561. DOI: 10.4049/jimmunol.1901051
Association of Model Neurotransmitters with Lipid Bilayer Membranes.
Josey BP, Heinrich F, Silin V, Lösche M, Josey BP, Heinrich F, Silin V, Lösche M. 2020. Association of Model Neurotransmitters with Lipid Bilayer Membranes. Biophysical journal 118(5): 1044-1057. DOI: 10.1016/j.bpj.2020.01.016
HIV vaccine delayed boosting increases Env variable region 2-specific antibody effector functions.
Easterhoff D, Pollara J, Luo K, Janus B, Gohain N, Williams LD, Tay MZ, Monroe A, Peachman K, Choe M, et al. 2020. HIV vaccine delayed boosting increases Env variable region 2-specific antibody effector functions. JCI insight 5(2): . DOI: 10.1172/jci.insight.131437
Redox-Channeling Polydopamine-Ferrocene (PDA-Fc) Coating To Confer Context-Dependent and Photothermal Antimicrobial Activities.
Song J, Liu H, Lei M, Tan H, Chen Z, Antoshin A, Payne GF, Qu X, Liu C, Song J, Liu H, Lei M, Tan H, Chen Z, Antoshin A, Payne GF, Qu X, Liu C. 2020. Redox-Channeling Polydopamine-Ferrocene (PDA-Fc) Coating To Confer Context-Dependent and Photothermal Antimicrobial Activities. ACS applied materials & interfaces 12(7): 8915-8928. DOI: 10.1021/acsami.9b22339