Publications

Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, et al. 2020. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature methods 17(7): 665-680. DOI: 10.1038/s41592-020-0848-2
Quality assurance at the point-of-care: Noninvasively detecting vaccine freezing variability using water proton NMR.
Briggs KT, Taraban MB, Yu YB, Briggs KT, Taraban MB, Yu YB. 2020. Quality assurance at the point-of-care: Noninvasively detecting vaccine freezing variability using water proton NMR. Vaccine 38(31): 4853-4860. DOI: 10.1016/j.vaccine.2020.05.049
Viral Hacks of the Plant Vasculature: The Role of Phloem Alterations in Systemic Virus Infection.
Kappagantu M, Collum TD, Dardick C, Culver JN, Kappagantu M, Collum TD, Dardick C, Culver JN. 2020. Viral Hacks of the Plant Vasculature: The Role of Phloem Alterations in Systemic Virus Infection. Annual review of virology 7(1): 351-370. DOI: 10.1146/annurev-virology-010320-072410
A redox-based electrogenetic CRISPR system to connect with and control biological information networks.
Bhokisham N, VanArsdale E, Stephens KT, Hauk P, Payne GF, Bentley WE, Bhokisham N, VanArsdale E, Stephens KT, Hauk P, Payne GF, Bentley WE. 2020. A redox-based electrogenetic CRISPR system to connect with and control biological information networks. Nature communications 11(1): 2427. DOI: 10.1038/s41467-020-16249-x
De novo protein design enables the precise induction of RSV-neutralizing antibodies.
Sesterhenn F, Yang C, Bonet J, Cramer JT, Wen X, Wang Y, Chiang CI, Abriata LA, Kucharska I, Castoro G, et al. 2020. De novo protein design enables the precise induction of RSV-neutralizing antibodies. Science (New York, N.Y.) 368(6492): . DOI: 10.1126/science.aay5051
Assessment of the Higher-Order Structure of Formulated Monoclonal Antibody Therapeutics by 2D Methyl Correlated NMR and Principal Component Analysis.
Arbogast LW, Delaglio F, Brinson RG, Marino JP, Arbogast LW, Delaglio F, Brinson RG, Marino JP. 2020. Assessment of the Higher-Order Structure of Formulated Monoclonal Antibody Therapeutics by 2D Methyl Correlated NMR and Principal Component Analysis. Current protocols in protein science 100(1): e105. DOI: 10.1002/cpps.105
Intertwined mechanisms define transport of anti-ICAM nanocarriers across the endothelium and brain delivery of a therapeutic enzyme.
Manthe RL, Loeck M, Bhowmick T, Solomon M, Muro S, Manthe RL, Loeck M, Bhowmick T, Solomon M, Muro S. 2020. Intertwined mechanisms define transport of anti-ICAM nanocarriers across the endothelium and brain delivery of a therapeutic enzyme. Journal of controlled release : official journal of the Controlled Release Society 324: 181-193. DOI: 10.1016/j.jconrel.2020.05.009
Citron C-05 inhibits both the penetration and colonization of Xanthomonas citri subsp. citri to achieve resistance to citrus canker disease.
Fu H, Zhao M, Xu J, Tan L, Han J, Li D, Wang M, Xiao S, Ma X, Deng Z, Fu H, Zhao M, Xu J, Tan L, Han J, Li D, Wang M, Xiao S, Ma X, Deng Z. 2020. Citron C-05 inhibits both the penetration and colonization of <i>Xanthomonas citri</i> subsp. <i>citri</i> to achieve resistance to citrus canker disease. Horticulture research 7(1): 58. DOI: 10.1038/s41438-020-0278-4
Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees.
Nguyen VD, Nguyen TH, Tayeen ASM, Laughinghouse HD, Sánchez-Reyes LL, Wiggins J, Pontelli E, Mozzherin D, O'Meara B, Stoltzfus A, Nguyen VD, Nguyen TH, Tayeen ASM, Laughinghouse HD, Sánchez-Reyes LL, Wiggins J, Pontelli E, Mozzherin D, O'Meara B, Stoltzfus A. 2020. Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees. Evolutionary bioinformatics online 16: 1176934319899384. DOI: 10.1177/1176934319899384
The importance and future of biochemical engineering.
Whitehead TA, Banta S, Bentley WE, Betenbaugh MJ, Chan C, Clark DS, Hoesli CA, Jewett MC, Junker B, Koffas M, et al. 2020. The importance and future of biochemical engineering. Biotechnology and bioengineering 117(8): 2305-2318. DOI: 10.1002/bit.27364
Synthetic Biology for Manipulating Quorum Sensing in Microbial Consortia.
Stephens K, Bentley WE, Stephens K, Bentley WE. 2020. Synthetic Biology for Manipulating Quorum Sensing in Microbial Consortia. Trends in microbiology 28(8): 633-643. DOI: 10.1016/j.tim.2020.03.009
Differential Interactions of Piscidins with Phospholipids and Lipopolysaccharides at Membrane Interfaces.
Cetuk H, Maramba J, Britt M, Scott AJ, Ernst RK, Mihailescu M, Cotten ML, Sukharev S, Cetuk H, Maramba J, Britt M, Scott AJ, Ernst RK, Mihailescu M, Cotten ML, Sukharev S. 2020. Differential Interactions of Piscidins with Phospholipids and Lipopolysaccharides at Membrane Interfaces. Langmuir : the ACS journal of surfaces and colloids 36(18): 5065-5077. DOI: 10.1021/acs.langmuir.0c00017
Cellular origins and genetic landscape of cutaneous gamma delta T cell lymphomas.
Daniels J, Doukas PG, Escala MEM, Ringbloom KG, Shih DJH, Yang J, Tegtmeyer K, Park J, Thomas JJ, Selli ME, et al. 2020. Cellular origins and genetic landscape of cutaneous gamma delta T cell lymphomas. Nature communications 11(1): 1806. DOI: 10.1038/s41467-020-15572-7
Comparative Analysis of One-Dimensional Protein Fingerprint by Line Shape Enhancement and Two-Dimensional 1H,13C Methyl NMR Methods for Characterization of the Higher Order Structure of IgG1 Monoclonal Antibodies.
Elliott KW, Ghasriani H, Wikström M, Giddens JP, Aubin Y, Delaglio F, Marino JP, Arbogast LW, Elliott KW, Ghasriani H, Wikström M, Giddens JP, Aubin Y, Delaglio F, Marino JP, Arbogast LW. 2020. Comparative Analysis of One-Dimensional Protein Fingerprint by Line Shape Enhancement and Two-Dimensional 1H,13C Methyl NMR Methods for Characterization of the Higher Order Structure of IgG1 Monoclonal Antibodies. Analytical chemistry 92(9): 6366-6373. DOI: 10.1021/acs.analchem.9b05385
Best Practices in Utilization of 2D-NMR Spectral Data as the Input for Chemometric Analysis in Biopharmaceutical Applications.
Brinson RG, Arbogast LW, Marino JP, Delaglio F, Brinson RG, Arbogast LW, Marino JP, Delaglio F. 2020. Best Practices in Utilization of 2D-NMR Spectral Data as the Input for Chemometric Analysis in Biopharmaceutical Applications. Journal of chemical information and modeling 60(4): 2339-2355. DOI: 10.1021/acs.jcim.0c00081
A Potent Host Defense Peptide Triggers DNA Damage and Is Active against Multidrug-Resistant Gram-Negative Pathogens.
Juliano SA, Serafim LF, Duay SS, Heredia Chavez M, Sharma G, Rooney M, Comert F, Pierce S, Radulescu A, Cotten ML, et al. 2020. A Potent Host Defense Peptide Triggers DNA Damage and Is Active against Multidrug-Resistant Gram-Negative Pathogens. ACS infectious diseases 6(5): 1250-1263. DOI: 10.1021/acsinfecdis.0c00051
Correction to: 1HN, 13C, and 15N resonance assignments of human calmodulin bound to a peptide derived from the STRA6 vitamin A transporter (CaMBP2).
Varney KM, Wilder PT, Godoy-Ruiz R, Mancia F, Weber DJ, Varney KM, Wilder PT, Godoy-Ruiz R, Mancia F, Weber DJ. 2020. Correction to: 1HN, 13C, and 15N resonance assignments of human calmodulin bound to a peptide derived from the STRA6 vitamin A transporter (CaMBP2). Biomolecular NMR assignments 14(2): 347. DOI: 10.1007/s12104-020-09942-x
A Coculture Based Tyrosine-Tyrosinase Electrochemical Gene Circuit for Connecting Cellular Communication with Electronic Networks.
VanArsdale E, Hörnström D, Sjöberg G, Järbur I, Pitzer J, Payne GF, van Maris AJA, Bentley WE, VanArsdale E, Hörnström D, Sjöberg G, Järbur I, Pitzer J, Payne GF, van Maris AJA, Bentley WE. 2020. A Coculture Based Tyrosine-Tyrosinase Electrochemical Gene Circuit for Connecting Cellular Communication with Electronic Networks. ACS synthetic biology 9(5): 1117-1128. DOI: 10.1021/acssynbio.9b00469
Mass Spectrometry Advances and Perspectives for the Characterization of Emerging Adoptive Cell Therapies.
Lombard-Banek C, Schiel JE, Lombard-Banek C, Schiel JE. 2020. Mass Spectrometry Advances and Perspectives for the Characterization of Emerging Adoptive Cell Therapies. Molecules (Basel, Switzerland) 25(6): . DOI: 10.3390/molecules25061396
Quorum Sensing Communication: Molecularly Connecting Cells, Their Neighbors, and Even Devices.
Wang S, Payne GF, Bentley WE, Wang S, Payne GF, Bentley WE. 2020. Quorum Sensing Communication: Molecularly Connecting Cells, Their Neighbors, and Even Devices. Annual review of chemical and biomolecular engineering 11: 447-468. DOI: 10.1146/annurev-chembioeng-101519-124728