Publications

Redox Probing for Chemical Information of Oxidative Stress.
Kim E, Winkler TE, Kitchen C, Kang M, Banis G, Bentley WE, Kelly DL, Ghodssi R, Payne GF, Kim E, Winkler TE, Kitchen C, Kang M, Banis G, Bentley WE, Kelly DL, Ghodssi R, Payne GF. 2017. Redox Probing for Chemical Information of Oxidative Stress. Analytical chemistry 89(3): 1583-1592. DOI: 10.1021/acs.analchem.6b03620
Short Carboxylic Acid-Carboxylate Hydrogen Bonds Can Have Fully Localized Protons.
Lin J, Pozharski E, Wilson MA, Lin J, Pozharski E, Wilson MA. 2017. Short Carboxylic Acid-Carboxylate Hydrogen Bonds Can Have Fully Localized Protons. Biochemistry 56(2): 391-402. DOI: 10.1021/acs.biochem.6b00906
Mathematical model of LsrR-binding and derepression in Escherichia coli K12.
Graff SM, Bentley WE, Graff SM, Bentley WE. 2017. Mathematical model of LsrR-binding and derepression in Escherichia coli K12. Journal of bioinformatics and computational biology 15(1): 1650039. DOI: 10.1142/S0219720016500396
Insightful directed evolution of Escherichia coli quorum sensing promoter region of the lsrACDBFG operon: a tool for synthetic biology systems and protein expression.
Hauk P, Stephens K, Mckay R, Virgile CR, Ueda H, Ostermeier M, Ryu KS, Sintim HO, Bentley WE, Hauk P, Stephens K, Mckay R, Virgile CR, Ueda H, Ostermeier M, Ryu KS, Sintim HO, Bentley WE. 2016. Insightful directed evolution of Escherichia coli quorum sensing promoter region of the lsrACDBFG operon: a tool for synthetic biology systems and protein expression. Nucleic acids research 44(21): 10515-10525.
Cellular aspartyl proteases promote the unconventional secretion of biologically active HIV-1 matrix protein p17.
Caccuri F, Iaria ML, Campilongo F, Varney K, Rossi A, Mitola S, Schiarea S, Bugatti A, Mazzuca P, Giagulli C, et al. 2016. Cellular aspartyl proteases promote the unconventional secretion of biologically active HIV-1 matrix protein p17. Scientific reports 6: 38027. DOI: 10.1038/srep38027
Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.
Ying J, Delaglio F, Torchia DA, Bax A, Ying J, Delaglio F, Torchia DA, Bax A. 2017. Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data. Journal of biomolecular NMR 68(2): 101-118. DOI: 10.1007/s10858-016-0072-7
Homologues of the RPW8 Resistance Protein Are Localized to the Extrahaustorial Membrane that Is Likely Synthesized De Novo.
Berkey R, Zhang Y, Ma X, King H, Zhang Q, Wang W, Xiao S, Berkey R, Zhang Y, Ma X, King H, Zhang Q, Wang W, Xiao S. 2017. Homologues of the RPW8 Resistance Protein Are Localized to the Extrahaustorial Membrane that Is Likely Synthesized De Novo. Plant physiology 173(1): 600-613. DOI: 10.1104/pp.16.01539
Using a Redox Modality to Connect Synthetic Biology to Electronics: Hydrogel-Based Chemo-Electro Signal Transduction for Molecular Communication.
Liu Y, Tsao CY, Kim E, Tschirhart T, Terrell JL, Bentley WE, Payne GF, Liu Y, Tsao CY, Kim E, Tschirhart T, Terrell JL, Bentley WE, Payne GF. 2017. Using a Redox Modality to Connect Synthetic Biology to Electronics: Hydrogel-Based Chemo-Electro Signal Transduction for Molecular Communication. Advanced healthcare materials 6(1): . DOI: 10.1002/adhm.201600908
A Facile Two-Step Enzymatic Approach for Conjugating Proteins to Polysaccharide Chitosan at an Electrode Interface.
Bhokisham N, Liu Y, Pakhchanian H, Payne GF, Bentley WE, Bhokisham N, Liu Y, Pakhchanian H, Payne GF, Bentley WE. 2017. A Facile Two-Step Enzymatic Approach for Conjugating Proteins to Polysaccharide Chitosan at an Electrode Interface. Cellular and molecular bioengineering 10(1): 134-142. DOI: 10.1007/s12195-016-0472-5
Fluorescence Resonance Energy Transfer (FRET)-Based Analysis of Lipoplexes.
Pozharski E, Pozharski E. 2017. Fluorescence Resonance Energy Transfer (FRET)-Based Analysis of Lipoplexes. Methods in molecular biology (Clifton, N.J.) 1522: 251-256.
Fluorometric Analysis of Individual Cationic Lipid-DNA Complexes.
Pozharski E, Pozharski E. 2017. Fluorometric Analysis of Individual Cationic Lipid-DNA Complexes. Methods in molecular biology (Clifton, N.J.) 1522: 237-243.
Kinetic and thermodynamic studies of the interaction between activating and inhibitory Ly49 natural killer receptors and MHC class I molecules.
Romasanta PN, Curto LM, Sarratea MB, Noli Truant S, Antonoglou MB, Fernández Lynch MJ, Delfino JM, Mariuzza RA, Fernández MM, Malchiodi EL, Romasanta PN, Curto LM, Sarratea MB, Noli Truant S, Antonoglou MB, Fernández Lynch MJ, Delfino JM, Mariuzza RA, Fernández MM, Malchiodi EL. 2017. Kinetic and thermodynamic studies of the interaction between activating and inhibitory Ly49 natural killer receptors and MHC class I molecules. The Biochemical journal 474(1): 179-194. DOI: 10.1042/BCJ20160876
An HIV-1 Env-Antibody Complex Focuses Antibody Responses to Conserved Neutralizing Epitopes.
Chen Y, Wilson R, O'Dell S, Guenaga J, Feng Y, Tran K, Chiang CI, Arendt HE, DeStefano J, Mascola JR, et al. 2016. An HIV-1 Env-Antibody Complex Focuses Antibody Responses to Conserved Neutralizing Epitopes. Journal of immunology (Baltimore, Md. : 1950) 197(10): 3982-3998.
Structural Basis for Excision of 5-Formylcytosine by Thymine DNA Glycosylase.
Pidugu LS, Flowers JW, Coey CT, Pozharski E, Greenberg MM, Drohat AC, Pidugu LS, Flowers JW, Coey CT, Pozharski E, Greenberg MM, Drohat AC. 2016. Structural Basis for Excision of 5-Formylcytosine by Thymine DNA Glycosylase. Biochemistry 55(45): 6205-6208.
Antibiofilm Activities of a Novel Chimeolysin against Streptococcus mutans under Physiological and Cariogenic Conditions.
Yang H, Bi Y, Shang X, Wang M, Linden SB, Li Y, Li Y, Nelson DC, Wei H, Yang H, Bi Y, Shang X, Wang M, Linden SB, Li Y, Li Y, Nelson DC, Wei H. 2016. Antibiofilm Activities of a Novel Chimeolysin against Streptococcus mutans under Physiological and Cariogenic Conditions. Antimicrobial agents and chemotherapy 60(12): 7436-7443.
Modular construction of multi-subunit protein complexes using engineered tags and microbial transglutaminase.
Bhokisham N, Pakhchanian H, Quan D, Tschirhart T, Tsao CY, Payne GF, Bentley WE, Bhokisham N, Pakhchanian H, Quan D, Tschirhart T, Tsao CY, Payne GF, Bentley WE. 2016. Modular construction of multi-subunit protein complexes using engineered tags and microbial transglutaminase. Metabolic engineering 38: 1-9. DOI: 10.1016/j.ymben.2016.05.004
Global mapping of antibody recognition of the hepatitis C virus E2 glycoprotein: Implications for vaccine design.
Pierce BG, Keck ZY, Lau P, Fauvelle C, Gowthaman R, Baumert TF, Fuerst TR, Mariuzza RA, Foung SKH, Pierce BG, Keck ZY, Lau P, Fauvelle C, Gowthaman R, Baumert TF, Fuerst TR, Mariuzza RA, Foung SKH. 2016. Global mapping of antibody recognition of the hepatitis C virus E2 glycoprotein: Implications for vaccine design. Proceedings of the National Academy of Sciences of the United States of America 113(45): E6946-E6954. DOI: 10.1073/pnas.1614942113
Affinity maturation of a broadly neutralizing human monoclonal antibody that prevents acute hepatitis C virus infection in mice.
Keck ZY, Wang Y, Lau P, Lund G, Rangarajan S, Fauvelle C, Liao GC, Holtsberg FW, Warfield KL, Aman MJ, et al. 2016. Affinity maturation of a broadly neutralizing human monoclonal antibody that prevents acute hepatitis C virus infection in mice. Hepatology (Baltimore, Md.) 64(6): 1922-1933. DOI: 10.1002/hep.28850
Structural Insights into the Inhibitory Mechanism of an Antibody against B7-H6, a Stress-Induced Cellular Ligand for the Natural Killer Cell Receptor NKp30.
Xu X, Narni-Mancinelli E, Cantoni C, Li Y, Guia S, Gauthier L, Chen Q, Moretta A, Vély F, Eisenstein E, et al. 2016. Structural Insights into the Inhibitory Mechanism of an Antibody against B7-H6, a Stress-Induced Cellular Ligand for the Natural Killer Cell Receptor NKp30. Journal of molecular biology 428(22): 4457-4466. DOI: 10.1016/j.jmb.2016.09.011
Fusing Sensor Paradigms to Acquire Chemical Information: An Integrative Role for Smart Biopolymeric Hydrogels.
Kim E, Liu Y, Ben-Yoav H, Winkler TE, Yan K, Shi X, Shen J, Kelly DL, Ghodssi R, Bentley WE, et al. 2016. Fusing Sensor Paradigms to Acquire Chemical Information: An Integrative Role for Smart Biopolymeric Hydrogels. Advanced healthcare materials 5(20): 2595-2616. DOI: 10.1002/adhm.201600516