Publications

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Evaluation of template-based models in CASP8 with standard measures.
Cozzetto D, Kryshtafovych A, Fidelis K, Moult J, Rost B, Tramontano A. 2009. Evaluation of template-based models in CASP8 with standard measures. Proteins 77 Suppl 9: 18-28. DOI: 10.1002/prot.22561
Flow dynamics, binding and detachment of spherical carriers targeted to ICAM-1 on endothelial cells.
Calderon AJ, Muzykantov V, Muro S, Eckmann DM. 2009. Flow dynamics, binding and detachment of spherical carriers targeted to ICAM-1 on endothelial cells. Biorheology 46(4): 323-41. DOI: 10.3233/BIR-2009-0544
CASP8 results in context of previous experiments.
Kryshtafovych A, Fidelis K, Moult J. 2009. CASP8 results in context of previous experiments. Proteins 77 Suppl 9: 217-28. DOI: 10.1002/prot.22562
A new lipid anchor for sparsely tethered bilayer lipid membranes.
Heinrich F, Ng T, Vanderah DJ, Shekhar P, Mihailescu M, Nanda H, Lösche M. 2009. A new lipid anchor for sparsely tethered bilayer lipid membranes. Langmuir : the ACS journal of surfaces and colloids 25(7): 4219-29.
A survey of proteins encoded by non-synonymous single nucleotide polymorphisms reveals a significant fraction with altered stability and activity.
Allali-Hassani A, Wasney GA, Chau I, Hong BS, Senisterra G, Loppnau P, Shi Z, Moult J, Edwards AM, Arrowsmith CH, et al. 2009. A survey of proteins encoded by non-synonymous single nucleotide polymorphisms reveals a significant fraction with altered stability and activity. The Biochemical journal 424(1): 15-26. DOI: 10.1042/BJ20090723
Selective expansion of HIV-1 envelope glycoprotein-specific B cell subsets recognizing distinct structural elements following immunization.
Dosenovic P, Chakrabarti B, Soldemo M, Douagi I, Forsell MN, Li Y, Phogat A, Paulie S, Hoxie J, Wyatt RT, et al. 2009. Selective expansion of HIV-1 envelope glycoprotein-specific B cell subsets recognizing distinct structural elements following immunization. Journal of immunology (Baltimore, Md. : 1950) 183(5): 3373-82. DOI: 10.4049/jimmunol.0900407
Structure of PqsD, a Pseudomonas quinolone signal biosynthetic enzyme, in complex with anthranilate.
Bera AK, Atanasova V, Robinson H, Eisenstein E, Coleman JP, Pesci EC, Parsons JF. 2009. Structure of PqsD, a Pseudomonas quinolone signal biosynthetic enzyme, in complex with anthranilate. Biochemistry 48(36): 8644-55. DOI: 10.1021/bi9009055
Genomic mutations associated with mild and severe deficiencies of transcobalamin I (haptocorrin) that cause mildly and severely low serum cobalamin levels.
Carmel R, Parker J, Kelman Z. 2009. Genomic mutations associated with mild and severe deficiencies of transcobalamin I (haptocorrin) that cause mildly and severely low serum cobalamin levels. British journal of haematology 147(3): 386-91. DOI: 10.1111/j.1365-2141.2009.07855.x
Augmentation of Cav1 channel current and action potential duration after uptake of S100A1 in sympathetic ganglion neurons.
Hernández-Ochoa EO, Prosser BL, Wright NT, Contreras M, Weber DJ, Schneider MF. 2009. Augmentation of Cav1 channel current and action potential duration after uptake of S100A1 in sympathetic ganglion neurons. American journal of physiology. Cell physiology 297(4): C955-70. DOI: 10.1152/ajpcell.00140.2009
Biomechanics of single chondrocytes under direct shear.
Ofek G, Dowling EP, Raphael RM, McGarry JP, Athanasiou KA. 2010. Biomechanics of single chondrocytes under direct shear. Biomechanics and modeling in mechanobiology 9(2): 153-62. DOI: 10.1007/s10237-009-0166-1
Backbone assignment of HINT1 protein, a mouse histidine triad nucleotide binding protein.
Bai G, Feng B, Wang JB, Varney KM, Shapiro M. 2009. Backbone assignment of HINT1 protein, a mouse histidine triad nucleotide binding protein. Biomolecular NMR assignments 3(1): 57-9. DOI: 10.1007/s12104-008-9141-5
Arabidopsis 14-3-3 lambda is a positive regulator of RPW8-mediated disease resistance.
Yang X, Wang W, Coleman M, Orgil U, Feng J, Ma X, Ferl R, Turner JG, Xiao S. 2009. Arabidopsis 14-3-3 lambda is a positive regulator of RPW8-mediated disease resistance. The Plant journal : for cell and molecular biology 60(3): 539-50. DOI: 10.1111/j.1365-313X.2009.03978.x
Climbing mount probable: mutation as a cause of nonrandomness in evolution.
Stoltzfus A, Yampolsky LY. 2022. Climbing mount probable: mutation as a cause of nonrandomness in evolution. The Journal of heredity 100(5): 637-47. DOI: 10.1093/jhered/esp048
Interaction of the Tobacco mosaic virus replicase protein with a NAC domain transcription factor is associated with the suppression of systemic host defenses.
Wang X, Goregaoker SP, Culver JN. 2009. Interaction of the Tobacco mosaic virus replicase protein with a NAC domain transcription factor is associated with the suppression of systemic host defenses. Journal of virology 83(19): 9720-30. DOI: 10.1128/JVI.00941-09
High-affinity lamprey VLRA and VLRB monoclonal antibodies.
Tasumi S, Velikovsky CA, Xu G, Gai SA, Wittrup KD, Flajnik MF, Mariuzza RA, Pancer Z. 2009. High-affinity lamprey VLRA and VLRB monoclonal antibodies. Proceedings of the National Academy of Sciences of the United States of America 106(31): 12891-6. DOI: 10.1073/pnas.0904443106