Publications

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Performance of ZDOCK in CAPRI rounds 20-26.
Vreven T, Pierce BG, Hwang H, Weng Z. 2013. Performance of ZDOCK in CAPRI rounds 20-26. Proteins 81(12): 2175-82. DOI: 10.1002/prot.24432
Evolved Quorum sensing regulator, LsrR, for altered switching functions.
Adams BL, Carter KK, Guo M, Wu HC, Tsao CY, Sintim HO, Valdes JJ, Bentley WE. 2014. Evolved Quorum sensing regulator, LsrR, for altered switching functions. ACS synthetic biology 3(4): 210-9. DOI: 10.1021/sb400068z
Structure-based design of altered MHC class II-restricted peptide ligands with heterogeneous immunogenicity.
Chen S, Li Y, Depontieu FR, McMiller TL, English AM, Shabanowitz J, Kos F, Sidney J, Sette A, Rosenberg SA, et al. 2013. Structure-based design of altered MHC class II-restricted peptide ligands with heterogeneous immunogenicity. Journal of immunology (Baltimore, Md. : 1950) 191(10): 5097-106. DOI: 10.4049/jimmunol.1300467
Quantification of transferrin in human serum using both QconCAT and synthetic internal standards.
Zimmerman TA, Wang M, Lowenthal MS, Turko IV, Phinney KW. 2013. Quantification of transferrin in human serum using both QconCAT and synthetic internal standards. Analytical chemistry 85(21): 10362-8. DOI: 10.1021/ac402326v
Structure and dynamics of full-length HIV-1 capsid protein in solution.
Deshmukh L, Schwieters CD, Grishaev A, Ghirlando R, Baber JL, Clore GM. 2013. Structure and dynamics of full-length HIV-1 capsid protein in solution. Journal of the American Chemical Society 135(43): 16133-47. DOI: 10.1021/ja406246z
Calcium antagonists: a ready prescription for treating infectious diseases?
Clark KB, Eisenstein EM, Krahl SE. 2013. Calcium antagonists: a ready prescription for treating infectious diseases? Current topics in medicinal chemistry 13(18): 2291-305.
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and two signal-interrupting analogues reveal distinct mechanisms for ligand recognition.
Ha JH, Eo Y, Grishaev A, Guo M, Smith JA, Sintim HO, Kim EH, Cheong HK, Bentley WE, Ryu KS. 2013. Crystal structures of the LsrR proteins complexed with phospho-AI-2 and two signal-interrupting analogues reveal distinct mechanisms for ligand recognition. Journal of the American Chemical Society 135(41): 15526-35. DOI: 10.1021/ja407068v
Effects of desialylation on human α1-acid glycoprotein-ligand interactions.
Huang RY, Hudgens JW. 2013. Effects of desialylation on human α1-acid glycoprotein-ligand interactions. Biochemistry 52(40): 7127-36. DOI: 10.1021/bi4011094
The crystal structure of human quinolinic acid phosphoribosyltransferase in complex with its inhibitor phthalic acid.
Malik SS, Patterson DN, Ncube Z, Toth EA. 2014. The crystal structure of human quinolinic acid phosphoribosyltransferase in complex with its inhibitor phthalic acid. Proteins 82(3): 405-14. DOI: 10.1002/prot.24406
Increasing the potency of an alhydrogel-formulated anthrax vaccine by minimizing antigen-adjuvant interactions.
Watkinson A, Soliakov A, Ganesan A, Hirst K, Lebutt C, Fleetwood K, Fusco PC, Fuerst TR, Lakey JH. 2013. Increasing the potency of an alhydrogel-formulated anthrax vaccine by minimizing antigen-adjuvant interactions. Clinical and vaccine immunology : CVI 20(11): 1659-68. DOI: 10.1128/CVI.00320-13
Tuning cell cycle of insect cells for enhanced protein production.
Wu HC, Hebert CG, Hung CW, Quan DN, Carter KK, Bentley WE. 2013. Tuning cell cycle of insect cells for enhanced protein production. Journal of biotechnology 168(1): 55-61. DOI: 10.1016/j.jbiotec.2013.08.017
Pretreatment with pyridoxamine mitigates isolevuglandin-associated retinal effects in mice exposed to bright light.
Charvet CD, Saadane A, Wang M, Salomon RG, Brunengraber H, Turko IV, Pikuleva IA. 2013. Pretreatment with pyridoxamine mitigates isolevuglandin-associated retinal effects in mice exposed to bright light. The Journal of biological chemistry 288(41): 29267-80. DOI: 10.1074/jbc.M113.498832
Mass spectrometry quantification of PICALM and AP180 in human frontal cortex and neural retina.
Chen J, Pikuleva IA, Turko IV. 2013. Mass spectrometry quantification of PICALM and AP180 in human frontal cortex and neural retina. Analytical biochemistry 442(2): 253-8. DOI: 10.1016/j.ab.2013.08.005
Assessment of protein disorder region predictions in CASP10.
Monastyrskyy B, Kryshtafovych A, Moult J, Tramontano A, Fidelis K. 2014. Assessment of protein disorder region predictions in CASP10. Proteins 82 Suppl 2: 127-37. DOI: 10.1002/prot.24391
Fluorinated dendrimers as imaging agents for ¹⁹F MRI.
Yu YB. 2022. Fluorinated dendrimers as imaging agents for ¹⁹F MRI. Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology 5(6): 646-61. DOI: 10.1002/wnan.1239