Publications

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Structural insights into the evolution of the adaptive immune system.
Deng L, Luo M, Velikovsky A, Mariuzza RA. 2013. Structural insights into the evolution of the adaptive immune system. Annual review of biophysics 42: 191-215. DOI: 10.1146/annurev-biophys-083012-130422
Internal dynamics of the homotrimeric HIV-1 viral coat protein gp41 on multiple time scales.
Lakomek NA, Kaufman JD, Stahl SJ, Louis JM, Grishaev A, Wingfield PT, Bax A. 2013. Internal dynamics of the homotrimeric HIV-1 viral coat protein gp41 on multiple time scales. Angewandte Chemie (International ed. in English) 52(14): 3911-5. DOI: 10.1002/anie.201207266
Modification of tethered bilayers by phospholipid exchange with vesicles.
Budvytyte R, Mickevicius M, Vanderah DJ, Heinrich F, Valincius G. 2013. Modification of tethered bilayers by phospholipid exchange with vesicles. Langmuir : the ACS journal of surfaces and colloids 29(13): 4320-7. DOI: 10.1021/la304613a
A generalized strategy for immobilizing uniformly oriented membrane proteins at solid interfaces.
Vaish A, Silin V, Walker ML, Steffens KL, Krueger S, Yeliseev AA, Gawrisch K, Vanderah DJ. 2013. A generalized strategy for immobilizing uniformly oriented membrane proteins at solid interfaces. Chemical communications (Cambridge, England) 49(26): 2685-7. DOI: 10.1039/c3cc00077j
Structural and functional analysis of the pro-domain of human cathelicidin, LL-37.
Pazgier M, Ericksen B, Ling M, Toth E, Shi J, Li X, Galliher-Beckley A, Lan L, Zou G, Zhan C, et al. 2013. Structural and functional analysis of the pro-domain of human cathelicidin, LL-37. Biochemistry 52(9): 1547-58. DOI: 10.1021/bi301008r
In vivo performance of polymer nanocarriers dually-targeted to epitopes of the same or different receptors.
Papademetriou IT, Garnacho C, Schuchman EH, Muro S. 2013. In vivo performance of polymer nanocarriers dually-targeted to epitopes of the same or different receptors. Biomaterials 34(13): 3459-66. DOI: 10.1016/j.biomaterials.2013.01.069
Visualizing ligand molecules in Twilight electron density.
Weichenberger CX, Pozharski E, Rupp B. 2013. Visualizing ligand molecules in Twilight electron density. Acta crystallographica. Section F, Structural biology and crystallization communications 69(Pt 2): 195-200. DOI: 10.1107/S1744309112044387
Techniques, tools and best practices for ligand electron-density analysis and results from their application to deposited crystal structures.
Pozharski E, Weichenberger CX, Rupp B. 2013. Techniques, tools and best practices for ligand electron-density analysis and results from their application to deposited crystal structures. Acta crystallographica. Section D, Biological crystallography 69(Pt 2): 150-67. DOI: 10.1107/S0907444912044423
Thermococcus kodakarensis DNA replication.
Li Z, Kelman LM, Kelman Z. 2013. Thermococcus kodakarensis DNA replication. Biochemical Society transactions 41(1): 332-8. DOI: 10.1042/BST20120303
Six-site polarizable model of water based on the classical Drude oscillator.
Yu W, Lopes PE, Roux B, MacKerell AD. 2013. Six-site polarizable model of water based on the classical Drude oscillator. The Journal of chemical physics 138(3): 034508. DOI: 10.1063/1.4774577
Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography.
Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker TS, Schulten K, et al. 2013. Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography. PLoS pathogens 9(1): e1003132. DOI: 10.1371/journal.ppat.1003132
Autonomous bacterial localization and gene expression based on nearby cell receptor density.
Wu HC, Tsao CY, Quan DN, Cheng Y, Servinsky MD, Carter KK, Jee KJ, Terrell JL, Zargar A, Rubloff GW, et al. 2013. Autonomous bacterial localization and gene expression based on nearby cell receptor density. Molecular systems biology 9: 636. DOI: 10.1038/msb.2012.71
A unique IBMPFD-related P97/VCP mutation with differential binding pattern and subcellular localization.
Erzurumlu Y, Kose FA, Gozen O, Gozuacik D, Toth EA, Ballar P. 2013. A unique IBMPFD-related P97/VCP mutation with differential binding pattern and subcellular localization. The international journal of biochemistry & cell biology 45(4): 773-82. DOI: 10.1016/j.biocel.2013.01.006
Effects of gadolinium chelate on the evolution of the nanoscale structure in peptide hydrogels.
Taraban MB, Weerasekare M, Trewhella J, Shi X, Jeong EK, Yu YB. 2012. Effects of gadolinium chelate on the evolution of the nanoscale structure in peptide hydrogels. Biopolymers 98(1): 50-8. DOI: 10.1002/bip.21689
Reverse engineering to suggest biologically relevant redox activities of phenolic materials.
Kim E, Gordonov T, Liu Y, Bentley WE, Payne GF. 2013. Reverse engineering to suggest biologically relevant redox activities of phenolic materials. ACS chemical biology 8(4): 716-24. DOI: 10.1021/cb300605s