Publications

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Systematic structure modifications of multitarget prostate cancer drug candidate galeterone to produce novel androgen receptor down-regulating agents as an approach to treatment of advanced prostate cancer.
Purushottamachar P, Godbole AM, Gediya LK, Martin MS, Vasaitis TS, Kwegyir-Afful AK, Ramalingam S, Ates-Alagoz Z, Njar VC. 2013. Systematic structure modifications of multitarget prostate cancer drug candidate galeterone to produce novel androgen receptor down-regulating agents as an approach to treatment of advanced prostate cancer. Journal of medicinal chemistry 56(12): 4880-98. DOI: 10.1021/jm400048v
Flexible interwoven termini determine the thermal stability of thermosomes.
Zhang K, Wang L, Liu Y, Chan KY, Pang X, Schulten K, Dong Z, Sun F. 2013. Flexible interwoven termini determine the thermal stability of thermosomes. Protein & cell 4(6): 432-44. DOI: 10.1007/s13238-013-3026-9
Crystal structures of carbamate kinase from Giardia lamblia bound with citric acid and AMP-PNP.
Lim K, Kulakova L, Galkin A, Herzberg O. 2013. Crystal structures of carbamate kinase from Giardia lamblia bound with citric acid and AMP-PNP. PloS one 8(5): e64004. DOI: 10.1371/journal.pone.0064004
The Missing Heritability in T1D and Potential New Targets for Prevention.
Pierce BG, Eberwine R, Noble JA, Habib M, Shulha HP, Weng Z, Blankenhorn EP, Mordes JP. 2013. The Missing Heritability in T1D and Potential New Targets for Prevention. Journal of diabetes research 2013: 737485. DOI: 10.1155/2013/737485
Mass spectrometry assessment of ubiquitin carboxyl-terminal hydrolase L1 partitioning between soluble and particulate brain homogenate fractions.
Chen J, Huang RY, Turko IV. 2013. Mass spectrometry assessment of ubiquitin carboxyl-terminal hydrolase L1 partitioning between soluble and particulate brain homogenate fractions. Analytical chemistry 85(12): 6011-7. DOI: 10.1021/ac400831z
The novel BH3 α-helix mimetic JY-1-106 induces apoptosis in a subset of cancer cells (lung cancer, colon cancer and mesothelioma) by disrupting Bcl-xL and Mcl-1 protein-protein interactions with Bak.
Cao X, Yap JL, Newell-Rogers MK, Peddaboina C, Jiang W, Papaconstantinou HT, Jupitor D, Rai A, Jung KY, Tubin RP, et al. 2013. The novel BH3 α-helix mimetic JY-1-106 induces apoptosis in a subset of cancer cells (lung cancer, colon cancer and mesothelioma) by disrupting Bcl-xL and Mcl-1 protein-protein interactions with Bak. Molecular cancer 12(1): 42. DOI: 10.1186/1476-4598-12-42
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.
Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, et al. 2013. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC bioinformatics 14: 158. DOI: 10.1186/1471-2105-14-158
Delineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralization.
Georgiev IS, Doria-Rose NA, Zhou T, Kwon YD, Staupe RP, Moquin S, Chuang GY, Louder MK, Schmidt SD, Altae-Tran HR, et al. 2013. Delineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralization. Science (New York, N.Y.) 340(6133): 751-6. DOI: 10.1126/science.1233989
Investigating polymer thiolation in gene delivery.
Bacalocostantis I, Mane VP, Goodley AS, Bentley WE, Muro S, Kofinas P. 2013. Investigating polymer thiolation in gene delivery. Journal of biomaterials science. Polymer edition 24(8): 912-26. DOI: 10.1080/09205063.2012.727266
Chirality-Mediated Mechanical and Structural Properties of Oligopeptide Hydrogels.
Taraban MB, Feng Y, Hammouda B, Hyland LL, Yu YB. 2012. Chirality-Mediated Mechanical and Structural Properties of Oligopeptide Hydrogels. Chemistry of materials : a publication of the American Chemical Society 24(12): 2299-2310.
A practical implementation of de-Pake-ing via weighted Fourier transformation.
Sani MA, Weber DK, Delaglio F, Separovic F, Gehman JD. 2013. A practical implementation of de-Pake-ing via weighted Fourier transformation. PeerJ 1: e30. DOI: 10.7717/peerj.30
Misplaced helix slows down ultrafast pressure-jump protein folding.
Prigozhin MB, Liu Y, Wirth AJ, Kapoor S, Winter R, Schulten K, Gruebele M. 2013. Misplaced helix slows down ultrafast pressure-jump protein folding. Proceedings of the National Academy of Sciences of the United States of America 110(20): 8087-92. DOI: 10.1073/pnas.1219163110
An interplay between electrostatic and polar interactions in peptide hydrogels.
Joyner K, Taraban MB, Feng Y, Yu YB. 2013. An interplay between electrostatic and polar interactions in peptide hydrogels. Biopolymers 100(2): 174-83. DOI: 10.1002/bip.22194
Mass spectrometry quantification revealed accumulation of C-terminal fragment of apolipoprotein E in the Alzheimer's frontal cortex.
Wang M, Turko IV. 2013. Mass spectrometry quantification revealed accumulation of C-terminal fragment of apolipoprotein E in the Alzheimer's frontal cortex. PloS one 8(4): e61498. DOI: 10.1371/journal.pone.0061498
Universal proteolysis and MS(n) for N- and O-glycan branching analysis.
Schiel JE, Smith NJ, Phinney KW. 2013. Universal proteolysis and MS(n) for N- and O-glycan branching analysis. Journal of mass spectrometry : JMS 48(4): 533-8. DOI: 10.1002/jms.3196